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TRNA2SAP(1)		   NCBI	Tools User's Manual		   TRNA2SAP(1)

NAME
       trna2sap	- convert tRNAscan-SE output to	an ASN.1 Seq-annot object

SYNOPSIS
       trna2sap	  [-]  [-a]  [-c str]  [-f str]	 [-i filename]	[-j]  [-m str]
       [-n str]	[-o filename] [-p dir] [-r dir]	[-s] [-t str] [-u] [-x str]

DESCRIPTION
       trna2sap	reads a	text file produced by tRNAscan-SE and produces a  cor-
       responding  ASN.1  Seq-annot  in	 the  format  understood by other NCBI
       tools.

OPTIONS
       A summary of options is included	below.

       -      Print usage message

       -a     Add tRNAscan-SE citation

       -c str Comment

       -f str Substring	Filter

       -i filename
	      Single Input file	(standard input	by default)

       -j     Just produce a five-column feature table,	a la trna2tbl(1).

       -m str ReMark

       -n str Annotation Name (normally	"tRNA").

       -o filename
	      Single Output file (standard output by default)

       -p dir Path to files

       -r dir Path for Results

       -s     Ignore Pseudo tRNAs

       -t str Annotation Title (normally "tRNAscan-SE").

       -u     Ignore Undetermined tRNAs

       -x str File selection suffix with -p (.trna by default).

AUTHOR
       The National Center for Biotechnology Information.

SEE ALSO
       sequin(1), tbl2asn(1), trna2tbl(1).

NCBI				  2006-01-11			   TRNA2SAP(1)

NAME | SYNOPSIS | DESCRIPTION | OPTIONS | AUTHOR | SEE ALSO

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