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PS_LAV(1)		    General Commands Manual		     PS_LAV(1)

NAME
       ps_lav [-B] [-Z db_size]	- plot an "lav"	file in	postscript.

DESCRIPTION
       ps_lav  is a simple program to take "lav" format	output from "lalign35"
       and produce postscript alignment	plots (which look  like	 "dot-plots").
       It  was	designed  to work with the output of the lalign35 program, but
       should work with	other lav output as well.

       -B     color alignment lines using the "bit" score.

       -Z db_size
	      set the effective	database size for an  E()-value	 calculate  to
	      db_size,	and  color alignment lines using E()-values.  Requires
	      bit scores in the	lav ouput.

AUTHOR
       Bill Pearson
       wrp@virginia.EDU

				     local			     PS_LAV(1)

NAME | DESCRIPTION | AUTHOR

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