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NEX2TEXT_TREE(1)      User Contributed Perl Documentation     NEX2TEXT_TREE(1)

NAME
       nex2text_tree.pl	- Trees	as strings

SYNOPSIS
	nex2text_tree.pl [options] [file ...]
	nex2text_tree.pl --tree_width 100 --otu_spacing	4 --demo
	nex2text_tree.pl -i input.nex -o text_string_tree.out --tree_width 100 --otu_spacing 4

OPTIONS
	   -d or --demo			   Prints out a	default	tree to	the STDOUT
	   -h or --help			   Brief help message about the	options
	   -m or --manual		   Full	documentation
	   -i or --input <file_name>	   Specify input NEXUS file
	   -o or --output <file_name>	   Specify output file (default: STDOUT)
	   -w or --tree_width 30	   Total width of the output tree string (default = 30)	[Integer]
	   -s or --otu_spacing 4	   Vertical spacing betweein OTUs (default value = 4) [Integer]
	   -V or --version		   Print version information and quit
	   --verbose			   The parameters are also printed along with the tree.
	   -c or --cladogram  normal	   The parameters are also printed along with the tree.	(options: 'normal' or 'accelarated')

DESCRIPTION
	  B<nex2text_tree.pl> prgram will read the given input NEXUS file and converts the newick tree in the TreesBlock
	  as string.

AUTHOR(S)
		 Vivek Gopalan (gopalan_vivek@yahoo.com)

METHODS
perl v5.32.1			  2006-08-24		      NEX2TEXT_TREE(1)

NAME | SYNOPSIS | OPTIONS | DESCRIPTION | AUTHOR(S) | METHODS

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