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hmmconvert(1)			 HMMER Manual			 hmmconvert(1)

NAME
       hmmconvert - convert profile file to various formats

SYNOPSIS
       hmmconvert [options] hmmfile

DESCRIPTION
       The  hmmconvert utility converts	an input profile file to different HM-
       MER formats.

       By default, the input profile can be in	any  HMMER  format,  including
       old/obsolete  formats  from HMMER2, ASCII or binary; the	output profile
       is a current HMMER3 ASCII format.

       hmmfile may be '-' (dash), which	means reading this  input  from	 stdin
       rather than a file.

OPTIONS
       -h     Help;  print  a  brief  reminder	of  command line usage and all
	      available	options.

       -a     Output profiles in ASCII text format. This is the	default.

       -b     Output profiles in binary	format.

       -2     Output in	legacy HMMER2 ASCII text format, in ls (glocal)	 mode.
	      This  allows  HMMER3  models to be converted back	to a close ap-
	      proximation of HMMER2, for comparative studies.

       --outfmt	_s_
	      Output in	a HMMER3 ASCII text format other then the most current
	      one.   Valid  choices  for _s_ are 3/a through 3/f.  The current
	      format is	3/f, and this is the default. The format 3/b was  used
	      in  the official HMMER3 release, and the others were used	in the
	      various testing versions.

SEE ALSO
       See hmmer(1) for	a master man page with a list of  all  the  individual
       man pages for programs in the HMMER package.

       For  complete documentation, see	the user guide that came with your HM-
       MER distribution	(Userguide.pdf); or see	the HMMER web page (http://hm-
       mer.org/).

COPYRIGHT
       Copyright (C) 2019 Howard Hughes	Medical	Institute.
       Freely distributed under	the BSD	open source license.

       For  additional	information  on	 copyright and licensing, see the file
       called COPYRIGHT	in your	HMMER source distribution, or  see  the	 HMMER
       web page	(http://hmmer.org/).

AUTHOR
       http://eddylab.org

       "

HMMER 3.3			   Nov 2019			 hmmconvert(1)

NAME | SYNOPSIS | DESCRIPTION | OPTIONS | SEE ALSO | COPYRIGHT | AUTHOR

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