Skip site navigation (1)Skip section navigation (2)

FreeBSD Manual Pages

  
 
  

home | help
GMX-VIEW(1)			    GROMACS			   GMX-VIEW(1)

NAME
       gmx-view	- View a trajectory on an X-Windows terminal

SYNOPSIS
	  gmx view [-f [_.xtc/.trr/..._]] [-s [_.tpr_]]	[-n [_.ndx_]] [-b _time_]
		   [-e _time_] [-dt _time_]

DESCRIPTION
       gmx view	is the GROMACS trajectory viewer. This program reads a trajec-
       tory file, a run	input file and an index	file and plots a 3D  structure
       of  your	 molecule on your standard X Window screen. No need for	a high
       end graphics workstation, it even works on Monochrome screens.

       The following features have been	implemented: 3D	view, rotation,	trans-
       lation  and  scaling of your molecule(s), labels	on atoms, animation of
       trajectories, hardcopy in PostScript format, user defined  atom-filters
       runs  on	 MIT-X	(real X), open windows and motif, user friendly	menus,
       option to remove	periodicity, option to show computational box.

       Some of the more	common X command line options can be  used:  -bg,  -fg
       change colors, -font fontname changes the font.

OPTIONS
       Options to specify input	files:

       -f [<.xtc/.trr/^a|>] (traj.xtc)
	      Trajectory: xtc trr cpt gro g96 pdb tng

       -s [<.tpr>] (topol.tpr)
	      Portable xdr run input file

       -n [<.ndx>] (index.ndx) (Optional)
	      Index file

       Other options:

       -b <time> (0)
	      Time of first frame to read from trajectory (default unit	ps)

       -e <time> (0)
	      Time of last frame to read from trajectory (default unit ps)

       -dt <time> (0)
	      Only use frame when t MOD	dt = first time	(default unit ps)

KNOWN ISSUES
       o Balls option does not work

       o Some times dumps core without a good reason

SEE ALSO
       gmx(1)

       More	information    about	GROMACS	   is	 available    at    <-
       http://www.gromacs.org/>.

COPYRIGHT
       2020, GROMACS development team

2020.4				 Oct 06, 2020			   GMX-VIEW(1)

NAME | SYNOPSIS | DESCRIPTION | OPTIONS | KNOWN ISSUES | SEE ALSO | COPYRIGHT

Want to link to this manual page? Use this URL:
<https://www.freebsd.org/cgi/man.cgi?query=gmx-view&sektion=1&manpath=FreeBSD+13.0-RELEASE+and+Ports>

home | help