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CT2DB(1)			 User Commands			      CT2DB(1)

NAME
       ct2db - manual page for ct2db 2.4.14

SYNOPSIS
       ct2db [OPTIONS]... [FILES]...

DESCRIPTION
       ct2db 2.4.14

       Produce dot bracket notation of an RNA secondary	structure from Zuker's
       .ct file

       Convert Zuker's .ct files to dot-bracket	string

       -h, --help
	      Print help and exit

       -V, --version
	      Print version and	exit

       -p, --removePK
	      Remove pseudoknots from structure	(default=off)

       -c, --convertToRNA
	      Substitute all  nucleotides  with	 their	RNA  alphabet  counter
	      parts,  i.e.  convert  to	characters A, C, G, U or N for unknown
	      bases.

	      (default=off)

       -v, --verbose
	      Be verbose (default=off)

REFERENCES
       If you use this program in your work you	might want to cite:

       R. Lorenz, S.H. Bernhart, C.  Hoener  zu	 Siederdissen,	H.  Tafer,  C.
       Flamm,  P.F. Stadler and	I.L. Hofacker (2011), "ViennaRNA Package 2.0",
       Algorithms for Molecular	Biology: 6:26

       I.L. Hofacker, W. Fontana, P.F. Stadler,	S. Bonhoeffer, M.  Tacker,  P.
       Schuster	 (1994),  "Fast	Folding	and Comparison of RNA Secondary	Struc-
       tures", Monatshefte f. Chemie: 125, pp 167-188

       R. Lorenz, I.L. Hofacker, P.F. Stadler (2016), "RNA folding  with  hard
       and soft	constraints", Algorithms for Molecular Biology 11:1 pp 1-13

REPORTING BUGS
       If  in doubt our	program	is right, nature is at fault.  Comments	should
       be sent to rna@tbi.univie.ac.at.

ct2db 2.4.14			  August 2019			      CT2DB(1)

NAME | SYNOPSIS | DESCRIPTION | REFERENCES | REPORTING BUGS

Want to link to this manual page? Use this URL:
<https://www.freebsd.org/cgi/man.cgi?query=ct2db&sektion=1&manpath=FreeBSD+12.2-RELEASE+and+Ports>

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