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CT2DB(1) User Commands CT2DB(1) NAME ct2db - manual page for ct2db 2.4.14 SYNOPSIS ct2db [OPTIONS]... [FILES]... DESCRIPTION ct2db 2.4.14 Produce dot bracket notation of an RNA secondary structure from Zuker's .ct file Convert Zuker's .ct files to dot-bracket string -h, --help Print help and exit -V, --version Print version and exit -p, --removePK Remove pseudoknots from structure (default=off) -c, --convertToRNA Substitute all nucleotides with their RNA alphabet counter parts, i.e. convert to characters A, C, G, U or N for unknown bases. (default=off) -v, --verbose Be verbose (default=off) REFERENCES If you use this program in your work you might want to cite: R. Lorenz, S.H. Bernhart, C. Hoener zu Siederdissen, H. Tafer, C. Flamm, P.F. Stadler and I.L. Hofacker (2011), "ViennaRNA Package 2.0", Algorithms for Molecular Biology: 6:26 I.L. Hofacker, W. Fontana, P.F. Stadler, S. Bonhoeffer, M. Tacker, P. Schuster (1994), "Fast Folding and Comparison of RNA Secondary Struc- tures", Monatshefte f. Chemie: 125, pp 167-188 R. Lorenz, I.L. Hofacker, P.F. Stadler (2016), "RNA folding with hard and soft constraints", Algorithms for Molecular Biology 11:1 pp 1-13 REPORTING BUGS If in doubt our program is right, nature is at fault. Comments should be sent to rna@tbi.univie.ac.at. ct2db 2.4.14 August 2019 CT2DB(1)
NAME | SYNOPSIS | DESCRIPTION | REFERENCES | REPORTING BUGS
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