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BP_PROCESS_SGD(1)     User Contributed Perl Documentation    BP_PROCESS_SGD(1)

NAME
       bp_process_sgd.pl - Massage SGD annotation flat files into a version
       suitable	for the	Generic	Genome Browser

SYNOPSIS
	 % bp_process_sgd.pl chromosomal_features.tab >	yeast.gff

DESCRIPTION
       This script massages the	SGD sequence annotation	flat files located at
       ftp://genome-ftp.stanford.edu/pub/yeast/data_dump/feature/chromosomal_features.tab
       into a version of the GFF format	suitable for display by	the generic
       genome browser.

       To use this script, get the SGD chromosomal_features.tab	file from the
       FTP site	listed above, and run the following command:

	 % bp_process_sgd.pl chromosomal_features.tab >	yeast.gff

       The yeast.gff file can then be loaded into a Bio::DB::GFF database
       using the following command:

	 % bulk_load_gff.pl -d <databasename> yeast.gff

SEE ALSO
       Bio::DB::GFF, bulk_load_gff.pl, load_gff.pl

AUTHOR
       Lincoln Stein, lstein@cshl.org

       Copyright (c) 2002 Cold Spring Harbor Laboratory

       This library is free software; you can redistribute it and/or modify it
       under the same terms as Perl itself.  See DISCLAIMER.txt	for
       disclaimers of warranty.

perl v5.24.1			  2017-07-08		     BP_PROCESS_SGD(1)

NAME | SYNOPSIS | DESCRIPTION | SEE ALSO | AUTHOR

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