Skip site navigation (1)Skip section navigation (2)

FreeBSD Manual Pages

  
 
  

home | help
BP_MAKE_MRNA_PROTEIN(1User Contributed Perl DocumentatiBP_MAKE_MRNA_PROTEIN(1)

NAME
       bp_make_mrna_protein - Convert an input mRNA/cDNA sequence into protein

DESCRIPTION
       Convert an input	mRNA/cDNA sequence into	protein	using translate()

	 -f/--frame	      Specifies	frame [0,1,2]

       One can also specify:

	 -t/--terminator      Stop Codon character (defaults to	'*')
	 -u/--unknown	      Unknown Protein character	(defaults to 'X')
	 -cds/--fullcds	      Expected Full CDS	(with start and	Stop codon)
	 -throwOnError	      Throw error if no	Full CDS (defaults to 0)
	 -if/--format	      Input format (defaults to	FASTA/Pearson)
	 -of/--format	      Output format (defaults to FASTA/Pearson)
	 -o/--output	      Output Filename (defaults	to STDOUT)
	 -i/--input	      Input Filename (defaults to STDIN)
	 -ct/--codontable     Codon table to use (defaults to '1')

       See Bio::PrimarySeq for more information	on codon tables	and the
       translate() method

AUTHOR - Jason Stajich
	 Email jason-at-bioperl-dot-org

perl v5.32.1			  2019-12-07	       BP_MAKE_MRNA_PROTEIN(1)

NAME | DESCRIPTION | AUTHOR - Jason Stajich

Want to link to this manual page? Use this URL:
<https://www.freebsd.org/cgi/man.cgi?query=bp_make_mrna_protein&sektion=1&manpath=FreeBSD+13.0-RELEASE+and+Ports>

home | help