Skip site navigation (1)Skip section navigation (2)

FreeBSD Manual Pages


home | help
BP_COMPOSITE_LD(1)    User Contributed Perl Documentation   BP_COMPOSITE_LD(1)

       bp_composite_LD -i filename.prettybase.txt --sortbyld > outfile

	 bp_composite_LD -i filename.prettybase	[-o out.LD] [-f	prettybase/csv]	[--sortbyld] [--noconvertindels]

       This a script which allows an easy way to calculate composite LD.

       -i or --in     filename

       -f or --format genotype format (prettybase or CSV)

       --sortbyld     To see data sorted by LD instead of just all the
		      site1/site2 pair LD values.

       -o or --out    output filename, otherwise will print to STDOUT

       --noconvert    (applicable for prettybase format	file only)
		      if specified will	NOT attempt to convert indel
		      states to	'I' and	delete states ('-') to 'D'.

       -h or --help   see this documentation

   AUTHOR Jason	Stajich, Matthew Hahn
       For more	information contact:

       Matthew Hahn, <>	Jason Stajich

perl v5.24.1			  2017-07-08		    BP_COMPOSITE_LD(1)


Want to link to this manual page? Use this URL:

home | help