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BP_COMPOSITE_LD(1)    User Contributed Perl Documentation   BP_COMPOSITE_LD(1)

NAME
       bp_composite_LD -i filename.prettybase.txt --sortbyld > outfile

SYNOPSIS
	 bp_composite_LD -i filename.prettybase	[-o out.LD] [-f	prettybase/csv]	[--sortbyld] [--noconvertindels]

   DESCRIPTION
       This a script which allows an easy way to calculate composite LD.

   OPTIONS
       -i or --in     filename

       -f or --format genotype format (prettybase or CSV)

       --sortbyld     To see data sorted by LD instead of just all the
		      site1/site2 pair LD values.

       -o or --out    output filename, otherwise will print to STDOUT

       --noconvert    (applicable for prettybase format	file only)
		      if specified will	NOT attempt to convert indel
		      states to	'I' and	delete states ('-') to 'D'.

       -h or --help   see this documentation

   AUTHOR Jason	Stajich, Matthew Hahn
       For more	information contact:

       Matthew Hahn, <matthew.hahn-at-duke.edu>	Jason Stajich
       <jason-at-bioperl-dot-org>

perl v5.24.1			  2017-07-08		    BP_COMPOSITE_LD(1)

NAME | SYNOPSIS

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<https://www.freebsd.org/cgi/man.cgi?query=bp_composite_LD.pl&sektion=1&manpath=FreeBSD+12.0-RELEASE+and+Ports>

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