Skip site navigation (1)Skip section navigation (2)

FreeBSD Manual Pages

  
 
  

home | help
BP_AACOMP(1)	      User Contributed Perl Documentation	  BP_AACOMP(1)

NAME
       bp_aacomp - amino acid composition of protein sequences

SYNOPSIS
	 bp_aacomp [-f/--format	FORMAT]	[-h/--help] filename
	 or
	 bp_aacomp [-f/--format	FORMAT]	< filename
	 or
	 bp_aacomp [-f/--format	FORMAT]	-i filename

DESCRIPTION
       This scripts prints out the count of amino acids	over all protein
       sequences from the input	file.

OPTIONS
       The default sequence format is fasta.

       The sequence input can be provided using	any of the three methods:

       unnamed argument
	    bp_aacomp filename

       named argument
	    bp_aacomp -i filename

       standard	input
	    bp_aacomp <	filename

FEEDBACK
   Mailing Lists
       User feedback is	an integral part of the	evolution of this and other
       Bioperl modules.	Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About	the mailing lists

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of
       the bugs	and their resolution. Bug reports can be submitted via the
       web:

	 https://github.com/bioperl/bioperl-live/issues

AUTHOR - Jason Stajich
       Email jason@bioperl.org

HISTORY
       Based on	aacomp.c from an old version of	EMBOSS

perl v5.32.1			  2019-12-07			  BP_AACOMP(1)

NAME | SYNOPSIS | DESCRIPTION | OPTIONS | FEEDBACK | AUTHOR - Jason Stajich | HISTORY

Want to link to this manual page? Use this URL:
<https://www.freebsd.org/cgi/man.cgi?query=bp_aacomp&sektion=1&manpath=FreeBSD+13.0-RELEASE+and+Ports>

home | help