Skip site navigation (1)Skip section navigation (2)

FreeBSD Manual Pages

  
 
  

home | help
ASN2IDX(1)		   NCBI	Tools User's Manual		    ASN2IDX(1)

NAME
       asn2idx	-  index  ASN.1	 Bioseq-sets for fast access to	individual se-
       quences

SYNOPSIS
       asn2idx [-] [-b]	[-d dir] [-f filter] -p	path [-r path] [-t] [-x	str]

DESCRIPTION
       asn2idx indexes ASN.1 Bioseq-sets (such as GenBank  release  files)  to
       speed  retrieval	 of  the  individual sequences they contain.  For each
       file that it processes, it yields an output file	in the same  directory
       with the	extension .idx.

OPTIONS
       A summary of options is included	below.

       -      Print usage message

       -b     Bioseq-sets are Binary

       -d dir Required Subdirectory

       -f filter
	      Filter (default =	gbcon,gbest,gbgss,gbhtg,gbsts)

       -p path
	      Path to Files

       -p path
	      Path for Results

       -t     Recurse

       -x str File Selection Substring (default	= .aso)

AUTHOR
       The National Center for Biotechnology Information.

SEE ALSO
       asn2asn(1), asndhuff(1).

NCBI				  2008-12-13			    ASN2IDX(1)

NAME | SYNOPSIS | DESCRIPTION | OPTIONS | AUTHOR | SEE ALSO

Want to link to this manual page? Use this URL:
<https://www.freebsd.org/cgi/man.cgi?query=asn2idx&sektion=1&manpath=FreeBSD+12.2-RELEASE+and+Ports>

home | help