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ASN2GB(1)		   NCBI	Tools User's Manual		     ASN2GB(1)

NAME
       asn2gb -	convert	ASN.1 biological data to a GenBank-style flat format

SYNOPSIS
       asn2gb [-] [-A accession] [-F] [-a asn-type] [-b] [-c] [-d] [-f format]
       [-g N]  [-h N]  [-i filename]  [-j N]  [-k N]  [-l filename]  [-m mode]
       [-n filename]  [-o filename]  [-p] [-q filename]	[-r] [-s style]	[-t N]
       [-u N] [-y N]

DESCRIPTION
       asn2gb converts descriptions of biological sequences from NCBI's	 ASN.1
       format  to  one	of  several flat-file formats, and is the successor to
       asn2ff(1).

OPTIONS
       A summary of options is included	below.

       -      Print usage message

       -A accession
	      Accession	to fetch; may take the form accession,complexity,flags
	      where  complexity	 should	 normally be 0 and a flags value of -1
	      enables fetching of external features (as	with the legacy	-F op-
	      tion)

       -F     Fetch  remote  annotations  (equivalent  to specifying -A	acces-
	      sion,0,-1)

       -a asn-type
	      ASN.1 Type:
	      [Single record]
	      a	     Any (autodetected;	default)
	      e	     seq-Entry
	      b	     Bioseq
	      s	     bioseq-Set
	      m	     seq-subMit
	      q	     Catenated
	      [Release file; components	individually processed and freed]
	      t	     baTch bioseq-set
	      u	     batch seq-sUbmit

       -b     Input file is binary

       -c     Batch file is compressed

       -d     Seq-loc minus strand

       -f format
	      Format:
	      b	     GenBank (default)
	      bp or pb
		     GenBank and GenPept
	      e	     EMBL
	      p	     GenPept
	      q	     nucleotide	GBSet (XML)
	      r	     protein GBSet (XML)
	      t	     Feature table only
	      x	     nucleotide	INSDSet	(XML)
	      y	     tiny seq (XML)
	      Y	     FASTA
	      z	     protein INSDSet (XML)

       -g N   Bit flags	(all default to	off):
	      1	     HTML
	      2	     XML
	      4	     ContigFeats
	      8	     ContigSrcs
	      16     FarTransl

       -h N   Lock/Lookup Flags	(all default to	off):
	      8	     LockProd
	      16     LookupComp
	      64     LookupProd

       -i filename
	      Input file name (default = stdin)

       -j N   Start location (default is 0, beginning of sequence)

       -k N   End location (default is 0, end of sequence)

       -l filename
	      Log file

       -m mode
	      Mode:
	      r	     Release
	      e	     Entrez
	      s	     Sequin (default)
	      d	     Dump

       -n filename
	      Asn2Flat Executable (default = asn2flat)

       -o filename
	      Output file name (default	= stdout)

       -p     Propagate	top descriptors

       -q filename
	      Ffdiff Executable	(default = /netopt/genbank/subtool/bin/ffdiff)

       -r     Enable remote fetching

       -s style
	      Style:
	      n	     Normal (default)
	      s	     Segment
	      m	     Master
	      c	     Contig

       -t N   Batch:
	      1	     Report
	      2	     Sequin/Release
	      3	     asn2gb SSEC/nocleanup
	      4	     asn2flat BSEC/nocleanup
	      5	     asn2gb/asn2flat
	      6	     asn2gb NEW	dbxref/OLD dbxref
	      7	     oldasn2gb/newasn2gb
       -u N Custom flags (all default to off):
	      4	     Hide features
	      1792   Hide references
	      8192   Hide sources
	      262144 Hide translations

       -y N   Feature itemID

AUTHOR
       The National Center for Biotechnology Information.

SEE ALSO
       asn2all(1), asn2asn(1), asn2ff(1), asn2fsa(1), asn2xml(1), asndhuff(1),
       insdseqget(1), asn2gb.txt.

NCBI				  2016-09-01			     ASN2GB(1)

NAME | SYNOPSIS | DESCRIPTION | OPTIONS | AUTHOR | SEE ALSO

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