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ASN2FSA(1)		   NCBI	Tools User's Manual		    ASN2FSA(1)

NAME
       asn2fsa - convert biological sequence data from ASN.1 to	FASTA

SYNOPSIS
       asn2fsa	[-]  [-A acc] [-D] [-E]	[-H] [-L filename] [-T]	[-a type] [-b]
       [-c] [-d	path] [-e N] [-f path] [-g] [-h	filename]  [-i filename]  [-k]
       [-l]   [-m]   [-o filename]  [-p	path]  [-q filename]  [-r]  [-s]  [-u]
       [-v filename] [-x str] [-y] [-z]

DESCRIPTION
       asn2fsa converts	biological sequence data from ASN.1 to FASTA.

OPTIONS
       A summary of options is included	below.

       -      Print usage message

       -A acc Accession	to fetch

       -D     Use Dash for Gap

       -E     Extended Seq-ids

       -H     HTML spans

       -L filename
	      Log file

       -T     Use Threads

       -a type
	      Input ASN.1 type:
	      a	     Automatic (default)
	      z	     Any
	      e	     Seq-entry
	      b	     Bioseq
	      s	     Bioseq-set
	      m	     Seq-submit
	      t	     batch processing (suitable	for official releases; autode-
		     tects specific type)

       -b     Bioseq-set is Binary

       -c     Bioseq-set is Compressed

       -d path
	      Path to ReadDB Database

       -e N   Line length (70 by default; may range from 10 to 120)

       -f path
	      Path to indexed FASTA data

       -g     Expand delta gaps	into Ns

       -h filename
	      Far component cache output file name

       -i filename
	      Single input file	(standard input	by default)

       -k     Local fetching

       -l     Lock components in advance

       -m     Master style for near segmented sequences

       -o filename
	      Nucleotide Output	file name

       -p path
	      Path to ASN.1 Files

       -q filename
	      Quality score output file	name

       -r     Remote fetching from NCBI

       -s     Far genomic contig for quality scores

       -u     Recurse

       -v filename
	      Protein output file name

       -x str File selection substring (.ent by	default) [String]

       -y     Debugging

       -z     Print quality score gap as -1

AUTHOR
       The National Center for Biotechnology Information.

SEE ALSO
       asn2all(1), asn2asn(1), asn2ff(1), asn2gb(1), asn2xml(1), asndhuff(1).

NCBI				  2016-09-01			    ASN2FSA(1)

NAME | SYNOPSIS | DESCRIPTION | OPTIONS | AUTHOR | SEE ALSO

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