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Bio::Tree::NodeNHX(3) User Contributed Perl DocumentationBio::Tree::NodeNHX(3)

NAME
       Bio::Tree::NodeNHX - A Simple Tree Node with support for	NHX tags

SYNOPSIS
	   use Bio::Tree::NodeNHX;
	   my $nodeA = Bio::Tree::NodeNHX->new();
	   my $nodeL = Bio::Tree::NodeNHX->new();
	   my $nodeR = Bio::Tree::NodeNHX->new();

	   my $node = Bio::Tree::NodeNHX->new();
	   $node->add_Descendents($nodeL);
	   $node->add_Descendents($nodeR);

	   print "node is not a	leaf \n" if( $node->is_leaf);

DESCRIPTION
       Makes a Tree Node with NHX tags,	suitable for building a	Tree.  See
       Bio::Tree::Node for a full list of functionality.

FEEDBACK
   Mailing Lists
       User feedback is	an integral part of the	evolution of this and other
       Bioperl modules.	Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About	the mailing lists

   Support
       Please direct usage questions or	support	issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and
       reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the	problem	with code and
       data examples if	at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of
       the bugs	and their resolution. Bug reports can be submitted via the
       web:

	 https://github.com/bioperl/bioperl-live/issues

AUTHOR - Aaron Mackey
       Email amackey@virginia.edu

CONTRIBUTORS
       The NHX (New Hampshire eXtended)	format was created by Chris Zmasek,
       and is described	at:

	 http://sourceforge.net/projects/forester-atv/

APPENDIX
       The rest	of the documentation details each of the object	methods.
       Internal	methods	are usually preceded with a _

   new
	Title	: new
	Usage	: my $obj = Bio::Tree::NodeNHX->new();
	Function: Builds a new Bio::Tree::NodeNHX object
	Returns	: Bio::Tree::NodeNHX
	Args	: -left		 => pointer to Left descendent (optional)
		  -right	 => pointer to Right descenent (optional)
		  -branch_length => branch length [integer] (optional)
		  -bootstrap	 => bootstrap value (string)
		  -description	 => description	of node
		  -id		 => unique id for node
		  -nhx		 => hashref of NHX tags	and values

   nhx_tag
	Title	: nhx_tag
	Usage	: my $tag = $nodenhx->nhx_tag(%tags);
	Function: Set tag-value	pairs for NHX nodes
	Returns	: none
	Args	: hashref to update the	tags/value pairs
		  OR
		  with a scalar	value update the bootstrap value by default

perl v5.32.0			  2019-12-07		 Bio::Tree::NodeNHX(3)

NAME | SYNOPSIS | DESCRIPTION | FEEDBACK | AUTHOR - Aaron Mackey | CONTRIBUTORS | APPENDIX

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