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Bio::Tools::Tmhmm(3)  User Contributed Perl Documentation Bio::Tools::Tmhmm(3)

NAME
       Bio::Tools::Tmhmm - parse TMHMM output (TransMembrane HMM)

SYNOPSIS
	 use Bio::Tools::Tmhmm;
	 my $parser = Bio::Tools::Tmhmm->new(-fh => $filehandle	);
	 while ( my $tmhmm_feat	= $parser->next_result ) {
	    # do something, e.g.
	    push @tmhmm_feat, $tmhmm_feat;
	 }

DESCRIPTION
       TMHMM is	software for the prediction of transmembrane helices in
       proteins.  See  <http://www.cbs.dtu.dk/services/TMHMM/> for more
       details.

       This module parses the "long output" format of TMHMM 2.0	and creates a
       Bio:SeqFeature::Generic object for each "TMHelix" feature found from
       lines like this:

	 my_sequence_id	 TMHMM2.0  TMhelix     54    76

FEEDBACK
   Mailing Lists
       User feedback is	an integral part of the	evolution of this and other
       Bioperl modules.	Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About	the mailing lists

   Support
       Please direct usage questions or	support	issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and
       reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the	problem	with code and
       data examples if	at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of
       the bugs	and their resolution. Bug reports can be submitted via the
       web:

	 https://github.com/bioperl/bioperl-live/issues

AUTHOR - Torsten Seemann
       Email torsten.seemann AT	infotech.monash.edu.au

CONTRIBUTOR - Bala
       Email savikalpa@fugu-sg.org

APPENDIX
       The rest	of the documentation details each of the object	methods.
       Internal	methods	are usually preceded with a _

   new
	Title	: new
	Usage	: my $obj = Bio::Tools::Tmhmm->new();
	Function: Builds a new Bio::Tools::Tmhmm object
	Returns	: Bio::Tools::Tmhmm
	Args	: Either of the	following as per L<Bio::Root::IO> interface
		    -fh	  => $filehandle
		    -file => $filename

   next_result
	Title	: next_result
	Usage	: my $feat = $Tmhmm->next_result
	Function: Get the next result set from parser data
	Returns	: Bio::SeqFeature::Generic
	Args	: none

perl v5.32.1			  2019-12-07		  Bio::Tools::Tmhmm(3)

NAME | SYNOPSIS | DESCRIPTION | FEEDBACK | AUTHOR - Torsten Seemann | CONTRIBUTOR - Bala | APPENDIX

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