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Bio::Tools::PrositeScaUser Contributed Perl DocumentBio::Tools::PrositeScan(3)

NAME
       Bio::Tools::PrositeScan - Parser	for ps_scan result

SYNOPSIS
	 use Bio::Tools::PrositeScan;

	 my $factory = Bio::Tools::PrositeScan->new(
	     -file => 'out.PrositeScan'
	 );

	 while(my $match = $factory->next_prediction){
	     #	$match is of Bio::SeqFeature::FeaturePair
	     my	$q_id =	$fatch->feature1->seq_id;
	     my	$h_id =	$fatch->feature2->seq_id;
	 }

DESCRIPTION
       This is the parser of the output	of ps_scan program. It takes either a
       file handler or a file name, and	returns	a Bio::SeqFeature::FeaturePair
       object.

AUTHOR
       Juguang Xiao, juguang@tll.org.sg

   new
	 Title	 : new
	 Usage	 : Bio::Tools::PrositeScan->new(-file => 'out.PrositeScan');
		   Bio::Tools::PrositeScan->new(-fh => \*FH);
	 Returns : L<Bio::Tools::PrositeScan>

   next_prediction
	 Title	 : new
	 Usage	 :
	     while($result = $factory->next_prediction){
		 ;
	     }

	 Returns : a Bio::SeqFeature::FeaturePair object

perl v5.24.1			  2017-07-08	    Bio::Tools::PrositeScan(3)

NAME | SYNOPSIS | DESCRIPTION | AUTHOR

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