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Bio::Tools::Coil(3)   User Contributed Perl Documentation  Bio::Tools::Coil(3)

NAME
       Bio::Tools::Coil	- parser for Coil output

SYNOPSIS
	use Bio::Tools::Coil
	my $parser = Bio::Tools::Coil->new();
	while( my $sp_feat = $parser->next_result($file) ) {
	      #do something
	      #eg
	      push @sp_feat, $sp_feat;
	}

DESCRIPTION
	Parser for Coil	output

FEEDBACK
   Mailing Lists
	User feedback is an integral part of the evolution of this and other
	Bioperl	modules. Send your comments and	suggestions preferably to
	the Bioperl mailing list.  Your	participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About	the mailing lists

   Support
       Please direct usage questions or	support	issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and
       reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the	problem	with code and
       data examples if	at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of
       the bugs	and their resolution. Bug reports can be submitted via the
       web:

	 https://github.com/bioperl/bioperl-live/issues

AUTHOR
	Based on the EnsEMBL module Bio::EnsEMBL::Pipeline::Runnable::Protein::Coil
	originally written by Marc Sohrmann (ms2@sanger.ac.uk)
	Written	in BioPipe by Balamurugan Kumarasamy <savikalpa@fugu-sg.org>
       # Please	direct questions and support issues to <bioperl-l@bioperl.org>
       #
	Cared for by the Fugu Informatics team (fuguteam@fugu-sg.org)

APPENDIX
	The rest of the	documentation details each of the object methods.
	Internal methods are usually preceded with a _

   parse_results
	Title	: parse_results
	Usage	: obj->parse_results
	Function: Parses the coil output. Automatically	called by
		  next_result()	if not yet done.
	Example	:
	Returns	:

   next_result
	Title	: next_result
	Usage	: while($feat =	$coil->next_result($file)) {
			 # do something
		  }
	Function: Returns the next protein feature of the coil output file
	Returns	:
	Args	:

   _result
	Title	: _result
	Usage	: $feat	= $obj->_result()
	Function: internal
	Example	:
	Returns	:

   _add_prediction
	Title	: _add_prediction()
	Usage	: $obj->_add_prediction($feat)
	Function: internal
	Example	:
	Returns	:

   _predictions_parsed
	Title	: _predictions_parsed
	Usage	: $obj->_predictions_parsed
	Function: internal
	Example	:
	Returns	: TRUE or FALSE

   create_feature
	Title	: create_feature
	Usage	: obj->create_feature(\%feature)
	Function: Internal(not to be used directly)
	Returns	:
	Args	:

   _read_fasta
	Title	: _read_fasta
	Usage	: obj->_read_fasta($file)
	Function: Internal(not to be used directly)
	Returns	:
	Args	:

perl v5.32.1			  2019-12-07		   Bio::Tools::Coil(3)

NAME | SYNOPSIS | DESCRIPTION | FEEDBACK | AUTHOR | APPENDIX

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