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Bio::SeqIO::raw(3)    User Contributed Perl Documentation   Bio::SeqIO::raw(3)

NAME
       Bio::SeqIO::raw - raw sequence file input/output	stream

SYNOPSIS
       Do not use this module directly.	 Use it	via the	Bio::SeqIO class.

DESCRIPTION
       This object can transform Bio::Seq objects to and from raw flat file
       databases.

FEEDBACK
   Mailing Lists
       User feedback is	an integral part of the	evolution of this and other
       Bioperl modules.	Send your comments and suggestions preferably to one
       of the Bioperl mailing lists.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About	the mailing lists

   Support
       Please direct usage questions or	support	issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and
       reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the	problem	with code and
       data examples if	at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track
       the bugs	and their resolution.  Bug reports can be submitted via	the
       web:

	 https://github.com/bioperl/bioperl-live/issues

AUTHORS
	 Ewan Birney   E<lt>birney@ebi.ac.ukE<gt>
	 Lincoln Stein E<lt>lstein@cshl.orgE<gt>

CONTRIBUTORS
	 Jason Stajich E<lt>jason@bioperl.org<gt>

APPENDIX
       The rest	of the documentation details each of the object	methods.
       Internal	methods	are usually preceded with a _

   next_seq
	Title	: next_seq
	Usage	: $seq = $stream->next_seq()
	Function: returns the next sequence in the stream
	Returns	: Bio::Seq object
	Args	:

   write_seq
	Title	: write_seq
	Usage	: $stream->write_seq($seq)
	Function: writes the $seq object into the stream
	Returns	: 1 for	success	and 0 for error
	Args	: Array	of Bio::PrimarySeqI objects

   write_qual
	Title	: write_qual
	Usage	: $stream->write_qual($seq)
	Function: writes the $seq object into the stream
	Returns	: 1 for	success	and 0 for error
	Args	: Bio::Seq::Quality object

   variant
	Title	: variant
	Usage	: $format  = $obj->variant();
	Function: Get and set method for the sequence variant.	For raw	sequence, this
		  indicates whether to treat the input as multiple sequences (the
		  default) or as a single sequence.

		  Current values accepted are:

		   'single'    single sequence
		   'multiple'  multiple	sequences (default)
	Returns	: string
	Args	: new value, string

perl v5.32.1			  2019-12-07		    Bio::SeqIO::raw(3)

NAME | SYNOPSIS | DESCRIPTION | FEEDBACK | AUTHORS | CONTRIBUTORS | APPENDIX

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