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Bio::SeqIO::gbxml(3)  User Contributed Perl Documentation Bio::SeqIO::gbxml(3)

NAME
       Bio::SeqIO::gbxml - GenBank sequence input/output stream	using SAX

SYNOPSIS
       It is probably best not to use this object directly, but	rather go
       through the SeqIO handler system. To read a GenBank XML file:

	  $stream = Bio::SeqIO->new( -file => $filename, -format => 'gbxml');

	  while	( my $bioSeqObj	= $stream->next_seq() )	{
	       # do something with $bioSeqObj
	  }

       To write	a Seq object to	the current file handle	in GenBank XML format:

	  $stream->write_seq( -seq => $seqObj);

       If instead you would like a XML::DOM object containing the GBXML, use:

	  my $newXmlObject = $stream->to_bsml( -seq => $seqObj);

DEPENDENCIES
       In addition to parts of the Bio:: hierarchy, this module	uses:

       XML::SAX

DESCRIPTION
       This object can transform Bio::Seq objects to and from GenBank XML
       flatfiles.

FEEDBACK
   Mailing Lists
       User feedback is	an integral part of the	evolution of this and other
       Bioperl modules.	Send your comments and suggestions preferably to one
       of the Bioperl mailing lists.  Your participation is much appreciated.

	bioperl-l@bioperl.org		       - General discussion
	http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track
       the bugs	and their resolution. Bug reports can be submitted via the
       web:

	https://github.com/bioperl/bioperl-live/issues

AUTHOR - Ryan Golhar
       Email golharam-at-umdnj-dot-edu

METHODS
   next_seq
       Title   : next_seq Usage	  : my $bioSeqObj = $stream->next_seq
       Function: Retrieves the next sequence from a SeqIO::gbxml stream.
       Returns : A reference to	a Bio::Seq::RichSeq object Args	   :

perl v5.32.1			  2019-12-07		  Bio::SeqIO::gbxml(3)

NAME | SYNOPSIS | DEPENDENCIES | DESCRIPTION | FEEDBACK | AUTHOR - Ryan Golhar | METHODS

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