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Bio::SeqIO::bsml_sax(3User Contributed Perl DocumentatiBio::SeqIO::bsml_sax(3)

NAME
       Bio::SeqIO::bsml_sax - BSML sequence input/output stream	using SAX

SYNOPSIS
	It is probably best not	to use this object directly, but rather	go
	through	the SeqIO handler system. To read a BSML file:

	   $stream = Bio::SeqIO->new( -file => $filename, -format => 'bsml');

	   while ( my $bioSeqObj = $stream->next_seq() ) {
	       # do something with $bioSeqObj
	   }

	To write a Seq object to the current file handle in BSML XML format:

	   $stream->write_seq( -seq => $seqObj);

	If instead you would like a XML::DOM object containing the BSML, use:

	   my $newXmlObject = $stream->to_bsml(	-seq =>	$seqObj);

DEPENDENCIES
	In addition to parts of	the Bio:: hierarchy, this module uses:

	XML::SAX

DESCRIPTION
	This object can	transform Bio::Seq objects to and from BSML (XML)
	flatfiles.

FEEDBACK
   Mailing Lists
       User feedback is	an integral part of the	evolution of this and other
       Bioperl modules.	Send your comments and suggestions preferably to one
       of the Bioperl mailing lists.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About	the mailing lists

   Support
       Please direct usage questions or	support	issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and
       reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the	problem	with code and
       data examples if	at all possible.

   Reporting Bugs
	Report bugs to the Bioperl bug tracking	system to help us keep track
	the bugs and their resolution. Bug reports can be submitted via	the
	web:

	 https://github.com/bioperl/bioperl-live/issues

AUTHOR - Jason Stajich
       Email jason-at-bioperl-dot-org

METHODS
   next_seq
	Title	: next_seq
	Usage	: my $bioSeqObj	= $stream->next_seq
	Function: Retrieves the	next sequence from a SeqIO::bsml stream.
	Returns	: A reference to a Bio::Seq::RichSeq object
	Args	:

perl v5.32.1			  2019-12-07	       Bio::SeqIO::bsml_sax(3)

NAME | SYNOPSIS | DEPENDENCIES | DESCRIPTION | FEEDBACK | AUTHOR - Jason Stajich | METHODS

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