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Bio::SeqIO::ace(3)    User Contributed Perl Documentation   Bio::SeqIO::ace(3)

NAME
       Bio::SeqIO::ace - ace sequence input/output stream

SYNOPSIS
       Do not use this module directly.	 Use it	via the	Bio::SeqIO class.

DESCRIPTION
       This object can transform Bio::Seq objects to and from ace file format.
       It only parses a	DNA or Peptide objects contained in the	ace file,
       producing PrimarySeq objects from them.	All other objects in the files
       will be ignored.	 It doesn't attempt to parse any annotation attached
       to the containing Sequence or Protein objects, which would probably be
       impossible, since everyone's ACeDB schema can be	different.

       It won't	parse ace files	containing Timestamps correctly	either.	 This
       can easily be added if considered necessary.

FEEDBACK
   Mailing Lists
       User feedback is	an integral part of the	evolution of this and other
       Bioperl modules.	Send your comments and suggestions preferably to one
       of the Bioperl mailing lists.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About	the mailing lists

   Support
       Please direct usage questions or	support	issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and
       reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the	problem	with code and
       data examples if	at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track
       the bugs	and their resolution.  Bug reports can be submitted via	the
       web:

	 https://github.com/bioperl/bioperl-live/issues

AUTHORS	- James	Gilbert
       Email: jgrg@sanger.ac.uk

APPENDIX
       The rest	of the documentation details each of the object	methods.
       Internal	methods	are usually preceded with a _

   next_seq
	Title	: next_seq
	Usage	: $seq = $stream->next_seq()
	Function: returns the next sequence in the stream
	Returns	: Bio::Seq object
	Args	: NONE

   write_seq
	Title	: write_seq
	Usage	: $stream->write_seq(@seq)
	Function: writes the $seq object into the stream
	Returns	: 1 for	success	and 0 for error
	Args	: Bio::Seq object(s)

perl v5.32.1			  2019-12-07		    Bio::SeqIO::ace(3)

NAME | SYNOPSIS | DESCRIPTION | FEEDBACK | AUTHORS - James Gilbert | APPENDIX

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