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Bio::SeqIO::FTHelper(3User Contributed Perl DocumentatiBio::SeqIO::FTHelper(3)

NAME
       Bio::SeqIO::FTHelper - Helper class for EMBL/Genbank feature tables

SYNOPSIS
       Used by Bio::SeqIO::EMBL,Bio::SeqIO::genbank, and Bio::SeqIO::swiss to
       help process the	Feature	Table

DESCRIPTION
       Represents one particular Feature with the following fields

	     key - the key of the feature
	     loc - the location	string of the feature
	     <other fields> - other fields

FEEDBACK
   Mailing Lists
       User feedback is	an integral part of the	evolution of this and other
       Bioperl modules.	Send your comments and suggestions preferably to one
       of the Bioperl mailing lists.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About	the mailing lists

   Support
       Please direct usage questions or	support	issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and
       reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the	problem	with code and
       data examples if	at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track
       the bugs	and their resolution.  Bug reports can be submitted via	the
       web:

	 https://github.com/bioperl/bioperl-live/issues

AUTHOR - Ewan Birney
       Email birney@ebi.ac.uk

CONTRIBUTORS
       Jason Stajich jason@bioperl.org

APPENDIX
       The rest	of the documentation details each of the object	methods.
       Internal	methods	are usually preceded with a _

   _generic_seqfeature
	Title	: _generic_seqfeature
	Usage	: $fthelper->_generic_seqfeature($annseq, "GenBank")
	Function: processes fthelper into a generic seqfeature
	Returns	: TRUE on success and otherwise	FALSE
	Args	: The Bio::Factory::LocationFactoryI object to use for parsing
		  location strings. The	ID (e.g., display_id) of the sequence on which
		  this feature is located, optionally a	string indicating the source
		  (GenBank/EMBL/SwissProt)

   from_SeqFeature
	Title	: from_SeqFeature
	Usage	: @fthelperlist	= Bio::SeqIO::FTHelper::from_SeqFeature($sf,
							    $context_annseq);
	Function: constructor of fthelpers from	SeqFeatures
		:
		: The additional annseq	argument is to allow the building of FTHelper
		: lines	relevant to particular sequences (ie, when features are	spread over
		: enteries, knowing how	to build this)
	Returns	: an array of FThelpers
	Args	: seq features

   key
	Title	: key
	Usage	: $obj->key($newval)
	Function:
	Example	:
	Returns	: value	of key
	Args	: newvalue (optional)

   loc
	Title	: loc
	Usage	: $obj->loc($newval)
	Function:
	Example	:
	Returns	: value	of loc
	Args	: newvalue (optional)

   field
	Title	: field
	Usage	:
	Function:
	Example	:
	Returns	:
	Args	:

   add_field
	Title	: add_field
	Usage	:
	Function:
	Example	:
	Returns	:
	Args	:

perl v5.24.1			  2017-07-08	       Bio::SeqIO::FTHelper(3)

NAME | SYNOPSIS | DESCRIPTION | FEEDBACK | AUTHOR - Ewan Birney | CONTRIBUTORS | APPENDIX

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