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Bio::Search::Result::hUser3Contributed PerBio::Search::Result::hmmer3Result(3)

NAME
       Bio::Search::Result::hmmer3Result - DESCRIPTION of Object

SYNOPSIS
       Give standard usage here

DESCRIPTION
       Describe	the object here

FEEDBACK
   Mailing Lists
       User feedback is	an integral part of the	evolution of this and other
       Bioperl modules.	Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About	the mailing lists

   Support
       Please direct usage questions or	support	issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and
       reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the	problem	with code and
       data examples if	at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of
       the bugs	and their resolution. Bug reports can be submitted via the
       web:

	 https://github.com/bioperl/bioperl-live/issues

AUTHOR - Thomas	Sharpton
       Email thomas.sharpton@gmail.com

       Describe	contact	details	here

CONTRIBUTORS
       Additional contributors names and emails	here

APPENDIX
       The rest	of the documentation details each of the object	methods.
       Internal	methods	are usually preceded with a _

   new
	Title	: new
	Usage	: my $obj = new	Bio::Search::Result::hmmer3Result.pm();
	Function: Builds a new Bio::Search::Result::hmmer3Result.pm object
	Returns	: an instance of Bio::Search::Result::hmmer3Result.pm
	Args	: -hmm_name => string, name of hmm file
		  -sequence_file => name of the	sequence file

   hmm_name
	Title	: hmm_name
	Usage	: $obj->hmm_name($newval)
	Function: Get/Set the value of hmm_name
	Returns	: value	of hmm_name
	Args	: newvalue (optional)

   sequence_file
	Title	: sequence_file
	Usage	: $obj->sequence_file($newval)
	Function: Get/Set the value of sequence_file
	Returns	: value	of sequence_file
	Args	: newvalue (optional)

   next_model
	Title	: next_model
	Usage	: my $domain = $result->next_model
	Function: Returns the next domain - this
		  is an	alias for next_hit
	Returns	: L<Bio::Search::Hit::HitI> object
	Args	: none

   models
	Title	: models
	Usage	: my @domains =	$result->models;
	Function: Returns the list of HMM models seen -	this
		  is an	alias for hits()
	Returns	: Array	of L<Bio::Search::Hit::HitI> objects
	Args	: none

   rewind
	Title	: rewind
	Usage	: $result->rewind;
	Function: Allow	one to reset the Hit iteration to the beginning
		  Since	this is	an in-memory implementation
	Returns	: none
	Args	: none

perl v5.24.1			  2017-07-Bio::Search::Result::hmmer3Result(3)

NAME | SYNOPSIS | DESCRIPTION | FEEDBACK | AUTHOR - Thomas Sharpton | CONTRIBUTORS | APPENDIX

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