Skip site navigation (1)Skip section navigation (2)

FreeBSD Manual Pages

  
 
  

home | help
Bio::Search::Result::IUserNContributed PBio::Search::Result::INFERNALResult(3)

NAME
       Bio::Search::Result::INFERNALResult - A Result object for INFERNAL
       results

SYNOPSIS
	   # typically one gets	Results	from a SearchIO	stream
	   use Bio::SearchIO;
	   my $io = Bio::SearchIO->new(-format => 'infernal',
				       -file   => 't/data/cmsearch_output.txt');
	   while( my $result = $io->next_result	) {
	       while( my $hit =	$result->next_hit ) {
		 print join(" ", $result->query_name, $result->algorithm, $result->num_hits), "\n";
	       }
	   }

DESCRIPTION
       This object is a	specialization of Bio::Search::Result::GenericResult.
       There is	one extra method called	cm_name.

FEEDBACK
   Mailing Lists
       User feedback is	an integral part of the	evolution of this and other
       Bioperl modules.	Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About	the mailing lists

   Support
       Please direct usage questions or	support	issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and
       reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the	problem	with code and
       data examples if	at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of
       the bugs	and their resolution. Bug reports can be submitted via the
       web:

	 https://github.com/bioperl/bioperl-live/issues

AUTHOR - Paul Cantalupo
APPENDIX
       The rest	of the documentation details each of the object	methods.
       Internal	methods	are usually preceded with a _

   new
	Title	: new
	Usage	: my $obj = Bio::Search::Result::INFERNALResult->new();
	Function: Builds a new Bio::Search::Result::INFERNALResult object
	Returns	: Bio::Search::Result::INFERNALResult
	Args	: -cm_name    => string, name of covariance model (CM) file.
		  plus Bio::Search::Result::GenericResult parameters

   cm_name
	Title	: cm_name
	Usage	: $obj->cm_name($newvalue)
	Function: Get/Set value	of the covariance model	file name (cm_name)
	Returns	: value	of cm_name
	Args	: newvalue (optional)

perl v5.24.1			  2017-0Bio::Search::Result::INFERNALResult(3)

NAME | SYNOPSIS | DESCRIPTION | FEEDBACK | AUTHOR - Paul Cantalupo | APPENDIX

Want to link to this manual page? Use this URL:
<https://www.freebsd.org/cgi/man.cgi?query=Bio::Search::Result::INFERNALResult&sektion=3&manpath=FreeBSD+12.1-RELEASE+and+Ports>

home | help