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Bio::NEXUS::WeightSet(User Contributed Perl DocumentatBio::NEXUS::WeightSet(3)

NAME
       Bio::NEXUS::WeightSet - Represents column weights in alignment (	for
       each character)

SYNOPSIS
       new Bio::NEXUS::WeightSet($name,	\@weights, $iswt);

DESCRIPTION
       A module	representing column weights in alignment (for each character)

FEEDBACK
       All feedback (bugs, feature enhancements, etc.) are all greatly
       appreciated.

AUTHOR
	Chengzhi Liang (liangc@umbi.umd.edu)
	Weigang	Qiu (weigang@genectr.hunter.cuny.edu)
	Thomas Hladish (tjhladish at yahoo)

CONTRIBUTORS
	Peter Yang (pyang@rice.edu)

METHODS
   new
	Title	: new
	Usage	: $node	= new Bio::NEXUS::WeightSet($name, \@weights);
	Function: Creates a new	Bio::NEXUS::WeightSet object
	Returns	: Bio::NEXUS::WeightSet	object
	Args	: none

   set_weights
	Title	: set_weights
	Usage	: $weight->set_weights(\@weights);
	Function: stores it in the list	weights
	Returns	: none
	Args	: list of weights

   get_weights
	Title	: get_weights
	Usage	: @wts=@{$weightset->get_weights()};
	Function: Returns the weights array
	Returns	: reference to array containing	weights
	Args	: none

   select_weights
	Title	: select_weights
	Usage	: $set->select_weights($columns);
	Function: select a subset of characters
	Returns	: new self with	subset of weights
	Args	: column numbers

   is_wt
	Title	: is_wt
	Usage	: croak	unless $weight->is_wt();
	Function: Returns if object has	weights	(1 yes,	0 no)
	Returns	: weight existence (integer)
	Args	: none

   set_name
	Title	: set_name
	Usage	: $weight->set_name($name);
	Function: Sets the name	of the weightset
	Returns	: none
	Args	: name (string)

   get_name
	Title	: get_name
	Usage	: $name=$weight->get_name();
	Function: Returns the name of the weightset
	Returns	: name (string)
	Args	: none

   equals
	Name	: equals
	Usage	: $set->equals($another);
	Function: compare if two WeightSet objects are equal
	Returns	: boolean
	Args	: an WeightSet object

perl v5.32.1			  2007-09-24	      Bio::NEXUS::WeightSet(3)

NAME | SYNOPSIS | DESCRIPTION | FEEDBACK | AUTHOR | CONTRIBUTORS | METHODS

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