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Bio::MAGETAB::Util::ReUsereContributed Perl DoBio::MAGETAB::Util::RewriteAE(3)

NAME
       Bio::MAGETAB::Util::RewriteAE - A utility class providing methods to
       correct some common errors in ArrayExpress MAGE-TAB documents.

SYNOPSIS
	use Bio::MAGETAB::Util::RewriteAE;
	my $rw = Bio::MAGETAB::Util::RewriteAE->new();
	$rw->rewrite_sdrf( $sdrf );
	$rw->rewrite_idf( $idf );

DESCRIPTION
       At the time of writing, many ArrayExpress MAGE-TAB documents do not
       fully comply with the latest MAGE-TAB specification, and	this class can
       be used to rewrite such documents prior to import with the main
       Bio::MAGETAB classes. Typically the order of rewriting should be	as
       shown in	the SYNOPSIS, with the SDRF being rewritten first. This	is so
       the RewriteAE object can	record all the Term Sources referenced by the
       SDRF and	make sure they are all declared	in the IDF.

METHODS
       rewrite_sdrf
	 Given the name	of an SDRF file, overwrite said	file with a fixed
	 copy.

       rewrite_idf
	 Given the name	of an IDF file,	overwrite said file with a fixed copy.

SEE ALSO
       Bio::MAGETAB Bio::MAGETAB::Util::Reader

AUTHOR
       Tim F. Rayner <tfrayner@gmail.com>

LICENSE
       This library is released	under version 2	of the GNU General Public
       License (GPL).

perl v5.24.1			  2013-01-13  Bio::MAGETAB::Util::RewriteAE(3)

NAME | SYNOPSIS | DESCRIPTION | METHODS | SEE ALSO | AUTHOR | LICENSE

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