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Bio::MAGETAB::InvestigUsernContributed Perl DocuBio::MAGETAB::Investigation(3)

NAME
       Bio::MAGETAB::Investigation - MAGE-TAB investigation class

SYNOPSIS
	use Bio::MAGETAB::Investigation;

DESCRIPTION
       This class is used to store top-level information on the	investigation
       in MAGE-TAB. This class also acts as a container	for the	information in
       an IDF file. See	the BaseClass class for	superclass methods.

ATTRIBUTES
       title (required)
	 The title of the investigation	(data type: String).

       description (optional)
	 A free-text description of the	investigation (data type: String).

       date (optional)
	 The date on which the investigation was performed (data type: Date).

       publicReleaseDate (optional)
	 The date on which the experimental data was, or will be, publicly
	 released (data	type: Date).

       contacts	(optional)
	 A list	of contacts for	the investigation (data	type:
	 Bio::MAGETAB::Contact).

       factors (optional)
	 A list	of experimental	factors	(variables) studied during the
	 investigation (data type: Bio::MAGETAB::Factor).

       sdrfs (optional)
	 A list	of SDRFs associated with the investigation (data type:
	 Bio::MAGETAB::SDRF).

       protocols (optional)
	 A list	of experimental	protocols used in the investigation (data
	 type: Bio::MAGETAB::Protocol)

       publications (optional)
	 A list	of publications	related	to the investigation (data type:
	 Bio::MAGETAB::Publication).

       termSources (optional)
	 A list	of term	sources	(usually databases and/or ontologies) used to
	 annotate the investigation (data type:	Bio::MAGETAB::TermSource).

       designTypes (optional)
	 A list	of experiment design types, typically taken from a suitable
	 ontology (data	type: Bio::MAGETAB::ControlledTerm).

       normalizationTypes (optional)
	 A list	of experiment data normalization types (data type:
	 Bio::MAGETAB::ControlledTerm).

       replicateTypes (optional)
	 A list	of replicate types for the experiment (typically specifying
	 technical and/or biological replicates; date type:
	 Bio::MAGETAB::ControlledTerm).

       qualityControlTypes (optional)
	 A list	of quality control terms describing the	experiment (data type:
	 Bio::MAGETAB::ControlledTerm).

       comments	(optional)
	 A list	of user-defined	comments attached to the investigation (data
	 type: Bio::MAGETAB::Comment).

METHODS
       Each attribute has accessor (get_*) and mutator (set_*) methods,	and
       also predicate (has_*) and clearer (clear_*) methods where the
       attribute is optional. Where an attribute represents a one-to-many
       relationship the	mutator	accepts	an arrayref and	the accessor returns
       an array.

SEE ALSO
       Bio::MAGETAB::BaseClass

AUTHOR
       Tim F. Rayner <tfrayner@gmail.com>

LICENSE
       This library is released	under version 2	of the GNU General Public
       License (GPL).

perl v5.32.1			  2013-01-13	Bio::MAGETAB::Investigation(3)

NAME | SYNOPSIS | DESCRIPTION | ATTRIBUTES | METHODS | SEE ALSO | AUTHOR | LICENSE

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