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Bio::Factory::SequenceUseroContributed Perl DBio::Factory::SequenceFactoryI(3)

NAME
       Bio::Factory::SequenceFactoryI -	This interface allows for generic
       building	of sequences in	factories which	create sequences (like SeqIO)

SYNOPSIS
       # do not	use this object	directly it is an interface # get a
       Bio::Factory::SequenceFactoryI object like

	   use Bio::Seq::SeqFactory;
	   my $seqbuilder = Bio::Seq::SeqFactory->new('-type' => 'Bio::PrimarySeq');

	   my $seq = $seqbuilder->create(-seq => 'ACTGAT',
					 -display_id =>	'exampleseq');

	   print "seq is a ", ref($seq), "\n";

DESCRIPTION
       A generic way to	build Sequence objects via a pluggable factory.	 This
       reduces the amount of code that looks like

	 if( $type  eq 'Bio::PrimarySeq' ) { ... }
	 elsif(	$type eq 'Bio::Seq::RichSeq' ) { ... }

FEEDBACK
   Mailing Lists
       User feedback is	an integral part of the	evolution of this and other
       Bioperl modules.	Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About	the mailing lists

   Support
       Please direct usage questions or	support	issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and
       reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the	problem	with code and
       data examples if	at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of
       the bugs	and their resolution. Bug reports can be submitted via the
       web:

	 https://github.com/bioperl/bioperl-live/issues

AUTHOR - Jason Stajich
       Email jason-at-bioperl.org

APPENDIX
       The rest	of the documentation details each of the object	methods.
       Internal	methods	are usually preceded with a _

   create
	Title	: create
	Usage	: my $seq = $seqbuilder->create(-seq =>	'CAGT',
						-id => 'name');
	Function: Instantiates new Bio::PrimarySeqI (or	one of its child classes)
		  This object allows us	to genericize the instantiation	of sequence
		  objects.
	Returns	: Bio::PrimarySeqI
	Args	: initialization parameters specific to	the type of sequence
		  object we want.  Typically
		  -seq	      => $str,
		  -display_id => $name

perl v5.24.1			  2017-07-08 Bio::Factory::SequenceFactoryI(3)

NAME | SYNOPSIS | DESCRIPTION | FEEDBACK | AUTHOR - Jason Stajich | APPENDIX

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