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Bio::DB::SoapEUtilitieUseriContributed)Bio::DB::SoapEUtilities::LinkAdaptor(3)

NAME
       Bio::DB::SoapEUtilities::LinkAdaptor - Handle for Entrez	SOAP LinkSets

SYNOPSIS
	my $fac	= Bio::DB::SoapEUtilities->new();
	# run a	query, returning a LinkAdaptor
	$fac->elink( -db => 'nucleotide',
		     -dbfrom =>	'protein',
		     -id => [qw(828392 790 470338)]);
	my $links = $fac->elink->run( -auto_adapt => 1);
	# get the linked ids corresponding to the submitted ids
	# (may be arrays if multiple crossrefs,	or undef if none)
	my @nucids = $links->id_map(828392);
	# iterate over linksets
	while (	my $ls = $links->next_linkset )	{
	   my @from_ids	= $ls->submitted_ids;
	   my @to_ids =	$ls->ids;
	   my $from_db = $ls->db_from;
	   my $to_db = $ls->db_to;
	}

DESCRIPTION
       This adaptor provides an	iterator ("next_linkset()") and	other
       convenience functions for parsing NCBI Entrez EUtility "elink" SOAP
       results.

SEE ALSO
       Bio::DB::SoapEUtilities

FEEDBACK
   Mailing Lists
       User feedback is	an integral part of the	evolution of this and other
       Bioperl modules.	Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
       http://bioperl.org/wiki/Mailing_lists  -	About the mailing lists

   Support
       Please direct usage questions or	support	issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and
       reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the	problem	with code and
       data examples if	at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of
       the bugs	and their resolution. Bug reports can be submitted via the
       web:

	 http://redmine.open-bio.org/projects/bioperl/

AUTHOR - Mark A. Jensen
       Email maj -at- fortinbras -dot- us

APPENDIX
       The rest	of the documentation details each of the object	methods.
       Internal	methods	are usually preceded with a _

   new
	Title	: new
	Usage	: my $obj = new	Bio::DB::SoapEUtilities::LinkAdaptor();
	Function: Builds a new Bio::DB::SoapEUtilities::LinkAdaptor object
	Returns	: an instance of Bio::DB::SoapEUtilities::LinkAdaptor
	Args	:

   next_linkset()
	Title	: next_linkset
	Usage	:
	Function: return the next LinkSet from the attached Result
	Returns	:
	Args	:

   id_map()
	Title	: id_map
	Usage	: $to_id = $adaptor->id_map($from_id)
	Function: Return 'to-database' ids corresponding to
		  given	specified 'from-database' or
		  submitted ids
	Returns	: array	of scalars (to-database	ids or arrayrefs of ids)
	Args	: array	of scalars (from-database ids)

perl v5.24.1			  2017-Bio::DB::SoapEUtilities::LinkAdaptor(3)

NAME | SYNOPSIS | DESCRIPTION | SEE ALSO | FEEDBACK | AUTHOR - Mark A. Jensen | APPENDIX

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