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Bio::DB::GFF::Util::BiUsergContributed Perl DocuBio::DB::GFF::Util::Binning(3)

NAME
       Bio::DB::GFF::Util::Binning - binning utility for Bio::DB::GFF index

SYNOPSIS
	use Bio::DB::GFF::Util::Binning	qw(bin bin_bot bin_top);
	my $tier = bin($start,$stop,$min);

DESCRIPTION
       This is a utility module	that exports the functions bin(), bin_bot()
       and bin_top().  These functions translate a range on the	genome into a
       named bin that is used as an index in the Bio::DB::GFF schema.  The
       index makes certain range retrieval queries much	faster.

API
       The remainder of	the document describes the function calls.  No calls
       are exported by default,	but must be imported explicitly.

       $bin_name = bin($start,$stop,$bin_size)
	   Given a start, stop and bin size on the genome, translate this
	   location into a bin name.  In a list	context, returns the bin tier
	   name	and the	position that the bin begins.

       $bottom = bin_bot($tier,$start)
	   Given a tier	name and a range start position, returns the lower end
	   of the bin range.

       $top = bin_top($tier,$end)
	   Given a tier	name and the end of a range, returns the upper end of
	   the bin range.

BUGS
       None known yet.

SEE ALSO
       Bio::DB::GFF,

AUTHOR
       Lincoln Stein <lstein@cshl.org>.

       Copyright (c) 2001 Cold Spring Harbor Laboratory.

       This library is free software; you can redistribute it and/or modify it
       under the same terms as Perl itself.

perl v5.32.1			  2019-12-07	Bio::DB::GFF::Util::Binning(3)

NAME | SYNOPSIS | DESCRIPTION | API | BUGS | SEE ALSO | AUTHOR

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