Skip site navigation (1)Skip section navigation (2)

FreeBSD Manual Pages

  
 
  

home | help
Bio::DB::GFF::FeatnameUser Contributed Perl DocumentaBio::DB::GFF::Featname(3)

NAME
       Bio::DB::GFF::Featname -- The name of a feature

SYNOPSIS
	 use Bio::DB::GFF;

	 my $db	     = Bio::DB::GFF->new( -adaptor => 'dbi:mysql',
					  -dsn	   => 'dbi:mysql:elegans42');

	 my $feature = Bio::DB::GFF::Featname->new(Locus => 'unc-19');
	 my $segment = $db->segment($feature);

DESCRIPTION
       Bio::DB::GFF::Featname is the name of a feature.	 It contains two
       fields: name and	class.	It is typically	used by	the Bio::DB::GFF
       module to denote	a group, and is	accepted by Bio::DB::Relsegment->new()
       and Bio::DB::GFF->segment() as a	replacement for	the -name and -class
       arguments.

METHODS
   new
	Title	: new
	Usage	: $name	= Bio::DB::GFF::Featname->new($class,$name)
	Function: create a new Bio::DB::GFF::Featname object
	Returns	: a new	Bio::DB::GFF::Featname object
	Args	: class	and ID
	Status	: Public

   id
	Title	: id
	Usage	: $id =	$name->id
	Function: return a unique ID for the combination of class and name
	Returns	: a string
	Args	: none
	Status	: Public

       This method returns a unique combination	of the name and	class in the
       form "class:name".  Coincidentally, this	is the same format used	by
       AceDB.

   name
	Title	: name
	Usage	: $name	= $name->name
	Function: return the name of the Featname
	Returns	: a string
	Args	: none
	Status	: Public

   class
	Title	: class
	Usage	: $class = $name->class
	Function: return the name of the Featname
	Returns	: a string
	Args	: none
	Status	: Public

   asString
	Title	: asString
	Usage	: $string = $name->asString
	Function: same as name()
	Returns	: a string
	Args	: none
	Status	: Public

       This method is used to overload the "" operator.	 It is equivalent to
       calling name().

   clone
	Title	: clone
	Usage	: $new_clone = $type->clone;
	Function: clone	this object
	Returns	: a new	Bio::DB::GFF::Featname object
	Args	: none
	Status	: Public

       This method creates an exact copy of the	object.

BUGS
       This module is still under development.

SEE ALSO
       bioperl,	Bio::DB::GFF, Bio::DB::RelSegment

AUTHOR
       Lincoln Stein <lstein@cshl.org>.

       Copyright (c) 2001 Cold Spring Harbor Laboratory.

       This library is free software; you can redistribute it and/or modify it
       under the same terms as Perl itself.

perl v5.24.1			  2017-07-08	     Bio::DB::GFF::Featname(3)

NAME | SYNOPSIS | DESCRIPTION | METHODS | BUGS | SEE ALSO | AUTHOR

Want to link to this manual page? Use this URL:
<https://www.freebsd.org/cgi/man.cgi?query=Bio::DB::GFF::Featname&sektion=3&manpath=FreeBSD+12.0-RELEASE+and+Ports>

home | help