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Bio::DB::Flat::BDB(3) User Contributed Perl DocumentationBio::DB::Flat::BDB(3)

NAME
       Bio::DB::Flat::BDB - Interface for BioHackathon standard	BDB-indexed
       flat file

SYNOPSIS
	 #You should not be using this module directly.

       See Bio::DB::Flat.

DESCRIPTION
       This object provides the	basic mechanism	to associate positions in
       files with primary and secondary	name spaces. Unlike
       Bio::Index::Abstract (see Bio::Index::Abstract),	this is	specialized to
       work with the BerkeleyDB-indexed	"common" flat file format worked out
       at the 2002 BioHackathon.

       This object is the guts to the mechanism, which will be used by the
       specific	objects	inheriting from	it.

FEEDBACK
   Mailing Lists
       User feedback is	an integral part of the	evolution of this and other
       Bioperl modules.	Send your comments and suggestions preferably to one
       of the Bioperl mailing lists.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About	the mailing lists

   Support
       Please direct usage questions or	support	issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and
       reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the	problem	with code and
       data examples if	at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track
       the bugs	and their resolution.  Bug reports can be submitted via	email
       or the web:

	 https://github.com/bioperl/bioperl-live/issues

AUTHOR - Lincoln Stein
       Email - lstein@cshl.org

SEE ALSO
       Bio::DB::Flat,

APPENDIX
       The rest	of the documentation details each of the object	methods.
       Internal	methods	are usually preceded with an "_" (underscore).

   get_PrimarySeq_stream
	Title	: get_PrimarySeq_stream
	Usage	: $stream = get_PrimarySeq_stream
	Function: Makes	a Bio::DB::SeqStreamI compliant	object
		  which	provides a single method, next_primary_seq
	Returns	: Bio::DB::SeqStreamI
	Args	: none

   get_all_primary_ids
	Title	: get_all_primary_ids
	Usage	: @ids = $seqdb->get_all_primary_ids()
	Function: gives	an array of all	the primary_ids	of the
		  sequence objects in the database.
	Example	:
	Returns	: an array of strings
	Args	: none

   To Be Implemented in	Subclasses
       The following methods MUST be implemented by subclasses.

   May Be Overridden in	Subclasses
       The following methods MAY be overridden by subclasses.

perl v5.32.0			  2019-12-07		 Bio::DB::Flat::BDB(3)

NAME | SYNOPSIS | DESCRIPTION | FEEDBACK | AUTHOR - Lincoln Stein | SEE ALSO | APPENDIX

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