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Bio::Coordinate::MappeUser)Contributed Perl DocumenBio::Coordinate::MapperI(3)

NAME
       Bio::Coordinate::MapperI	- Interface describing coordinate mappers.

VERSION
       version 1.007001

SYNOPSIS
	 # not to be used directly

DESCRIPTION
       MapperI defines methods for classes capable for mapping locations
       between coordinate systems.

METHODS
   in
	Title	: in
	Usage	: $obj->in('peptide');
	Function: Set and read the input coordinate system.
	Example	:
	Returns	: value	of input system
	Args	: new value (optional),	Bio::LocationI

   out
	Title	: out
	Usage	: $obj->out('peptide');
	Function: Set and read the output coordinate system.
	Example	:
	Returns	: value	of output system
	Args	: new value (optional),	Bio::LocationI

   swap
	Title	: swap
	Usage	: $obj->swap;
	Function: Swap the direction of	mapping: input <-> output)
	Example	:
	Returns	: 1
	Args	:

   test
	Title	: test
	Usage	: $obj->test;
	Function: test that both components are	of same	length
	Example	:
	Returns	: ( 1 |	undef )
	Args	:

   map
	Title	: map
	Usage	: $newpos = $obj->map($loc);
	Function: Map the location from	the input coordinate system
		  to a new value in the	output coordinate system.
	Example	:
	Returns	: new value in the output coordiante system
	Args	: Bio::LocationI

   return_match
	Title	: return_match
	Usage	: $obj->return_match(1);
	Function: A flag to turn on the	simplified mode	of
		  returning only one joined Match object or undef
	Example	:
	Returns	: boolean
	Args	: boolean (optional)

FEEDBACK
   Mailing lists
       User feedback is	an integral part of the	evolution of this and other
       Bioperl modules.	Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About	the mailing lists

   Support
       Please direct usage questions or	support	issues to the mailing list:
       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and
       reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the	problem	with code and
       data examples if	at all possible.

   Reporting bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of
       the bugs	and their resolution. Bug reports can be submitted via the
       web:

	 https://github.com/bioperl/%%7Bdist%7D

AUTHOR
       Heikki Lehvaslaiho <heikki@bioperl.org>

COPYRIGHT
       This software is	copyright (c) by Heikki	Lehvaslaiho.

       This software is	available under	the same terms as the perl 5
       programming language system itself.

perl v5.32.1			  2016-12-15	   Bio::Coordinate::MapperI(3)

NAME | VERSION | SYNOPSIS | DESCRIPTION | METHODS | FEEDBACK | AUTHOR | COPYRIGHT

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