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Bio::Annotation::TargeUser Contributed Perl DocumentBio::Annotation::Target(3)

NAME
       Bio::Annotation::Target - Provides an object which represents a target
       (ie, a similarity hit) from one object to something in another database

SYNOPSIS
	  $target1 = Bio::Annotation::Target->new(-target_id  => 'F321966.1',
						 -start	     =>	1,
						 -end	     =>	200,
						 -strand     =>	1,   # or -1
						);

	  # or

	  $target2 = Bio::Annotation::Target->new();
	  $target2->target_id('Q75IM5');
	  $target2->start(7);
	  # ...	etc ...

	  # Target is-a	Bio::AnnotationI object, can be	added to annotation
	  # collections, e.g. the one on features or seqs
	  $feat->annotation->add_Annotation('Target', $target2);

DESCRIPTION
       Provides	an object which	represents a target (ie, a similarity hit)
       from one	object to something in another database	without	prescribing
       what is in the other database

AUTHOR - Scott Cain
       Scott Cain - cain@cshl.org

APPENDIX
       The rest	of the documentation details each of the object	methods.
       Internal	methods	are usually preceded with a _

AnnotationI implementing functions
   as_text
	Title	: as_text
	Usage	:
	Function:
	Example	:
	Returns	:
	Args	:

   display_text
	Title	: display_text
	Usage	: my $str = $ann->display_text();
	Function: returns a string. Unlike as_text(), this method returns a string
		  formatted as would be	expected for te	specific implementation.

		  One can pass a callback as an	argument which allows custom text
		  generation; the callback is passed the current instance and any text
		  returned
	Example	:
	Returns	: a string
	Args	: [optional] callback

   tagname
	Title	: tagname
	Usage	: $obj->tagname($newval)
	Function: Get/set the tagname for this annotation value.

		  Setting this is optional. If set, it obviates	the need to
		  provide a tag	to Bio::AnnotationCollectionI when adding
		  this object. When obtaining an AnnotationI object from the
		  collection, the collection will set the value	to the tag
		  under	which it was stored unless the object has a tag
		  stored already.

	Example	:
	Returns	: value	of tagname (a scalar)
	Args	: new value (a scalar, optional)

Specific accessors for Targets
   target_id
       Usage
	     $obj->target_id()	      #get existing value
	     $obj->target_id($newval) #set new value

       Function
       Returns
	   value of target_id (a scalar)

       Arguments
	   new value of	target_id (to set)

perl v5.32.1			  2019-12-07	    Bio::Annotation::Target(3)

NAME | SYNOPSIS | DESCRIPTION | AUTHOR - Scott Cain | APPENDIX | AnnotationI implementing functions | Specific accessors for Targets

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