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Bio::AlignIO::psi(3)  User Contributed Perl Documentation Bio::AlignIO::psi(3)

NAME
       Bio::AlignIO::psi - Read/Write PSI-BLAST	profile	alignment files

SYNOPSIS
       This module will	parse PSI-BLAST	output of the format seqid XXXX

DESCRIPTION
       This is a parser	for psi-blast blocks.

FEEDBACK
   Mailing Lists
       User feedback is	an integral part of the	evolution of this and other
       Bioperl modules.	Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About	the mailing lists

   Support
       Please direct usage questions or	support	issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and
       reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the	problem	with code and
       data examples if	at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of
       the bugs	and their resolution. Bug reports can be submitted via the
       web:

	 https://github.com/bioperl/bioperl-live/issues

AUTHOR - Jason Stajich
       Email jason@bioperl.org

APPENDIX
       The rest	of the documentation details each of the object	methods.
       Internal	methods	are usually preceded with a _

   new
	Title	: new
	Usage	: my $obj = Bio::AlignIO::psi->new();
	Function: Builds a new Bio::AlignIO::psi object
	Returns	: Bio::AlignIO::psi
	Args	:

   next_aln
	Title	: next_aln
	Usage	: $aln = $stream->next_aln()
	Function: returns the next alignment in	the stream
	Returns	: Bio::Align::AlignI object
	Args	: NONE

       See Bio::Align::AlignI

   write_aln
	Title	: write_aln
	Usage	: $stream->write_aln(@aln)
	Function: writes the NCBI psi-format object (.aln) into	the stream
	Returns	: 1 for	success	and 0 for error
	Args	: Bio::Align::AlignI object

       Bio::Align::AlignI

perl v5.32.0			  2019-12-07		  Bio::AlignIO::psi(3)

NAME | SYNOPSIS | DESCRIPTION | FEEDBACK | AUTHOR - Jason Stajich | APPENDIX

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