Skip site navigation (1)Skip section navigation (2)

FreeBSD Manual Pages

  
 
  

home | help
bsnmpget(1), bsnmpwalk(1), bsnmpset(1)
simple tools for querying SNMP agents
intro(1)
introduction to general commands (tools and utilities)
loader.4th(8)
loader.conf processing tools
Sympa::Tools::Domains(3Sympa)
Domains-related functions
Sympa::Tools::File(3Sympa)
File-related functions
Sympa::Tools::Text(3Sympa)
Text-related functions
Sympa::Tools::Time(3Sympa)
Time-related functions
alcbanner(1)
Display a standardized banner for Alliance tools man1/alc_origin.1
autcross(1)
cross-compare tools that process automata
autopvf(1), pvf tools(1)
utilities to convert various sound formats
avarice(1)
Provides an interface from avr-gdb to Atmel's AVR in-circuit debugging tools
bcftools(1)
utilities for variant calling and manipulating VCFs and BCFs
bwping(8)
and bwping6 are tools to measure bandwidth and response times between two hosts using Internet Control Message Protocol (ICMP) echo request/echo reply mechanism
cbcrc(4)
Configuration file for Couchbase command line tools
ceylon(1)
The top level Ceylon tool is used to execute other Ceylon tools
ceylon-classpath(1), ceylon classpath(1)
Prints a classpath suitable for passing to Java tools to run a given Ceylon module
ceylon-help(1), ceylon help(1)
Displays help information about other Ceylon tools
ceylon-jigsaw(1), ceylon jigsaw(1)
Tools to interop with Java 9 (Jigsaw) modules
cgioptions.cfg(5)
Command-line parameters for the Xymon CGI tools
cgoban(6)
X11 Go Toolset
cmdtest(1)
blackbox testing of Unix command line tools
createPYMB(1), readPYBase(1), readPYMB(1), mb2org(1), scel2org(1)
fcitx Pinyin related tools
djvutoxml(1), djvuxmlparser(1)
DjVuLibre XML Tools
ecatools(1)
audio processing utils based on ecasound
exrtools(1)
a collection of utilities for manipulating OpenEXR images
extraclangtools-devel(1), extraclangtools(1)
Extra Clang Tools Documentation Welcome to the clang-tools-extra project which contains extra tools built using Clang(aqs tooling APIs
extraclangtools10(1), extraclangtools(1)
Extra Clang Tools Documentation Welcome to the clang-tools-extra project which contains extra tools built using Clang(aqs tooling APIs
extraclangtools11(1), extraclangtools(1)
Extra Clang Tools Documentation Welcome to the clang-tools-extra project which contains extra tools built using Clang(aqs tooling APIs
extraclangtools12(1), extraclangtools(1)
Extra Clang Tools Documentation Welcome to the clang-tools-extra project which contains extra tools built using Clang(aqs tooling APIs
extraclangtools70(1), extraclangtools(1)
Extra Clang Tools Documentation Welcome to the clang-tools-extra project which contains extra tools built using Clang(aqs tooling API(aqs
extraclangtools80(1), extraclangtools(1)
Extra Clang Tools Documentation Welcome to the clang-tools-extra project which contains extra tools built using Clang(aqs tooling APIs
extraclangtools90(1), extraclangtools(1)
Extra Clang Tools Documentation Welcome to the clang-tools-extra project which contains extra tools built using Clang(aqs tooling APIs
flow-export(1)
Export flow-tools files into other NetFlow packages
flow-import(1)
Import flows into flow-tools from other NetFlow packages
flow-tools(1)
Tool set for working with NetFlow data
flow-tools-examples(1)
Example usage of flow-tools
gcin-tools(1)
configuration tools of gcin
get-edid(1), parse-edid(1)
read-edid tools to retrieve and interpret monitor specifications using the VESA VBE DDC protocol
git-difftool(1)
Show changes using common diff tools
git-mergetool(1)
Run merge conflict resolution tools to resolve merge conflicts
graphviz(7)
rich set of graph drawing tools
hfsutils(1)
tools for reading and writing Macintosh HFS volumes
hxtools(7)
Suite of various shell scripts and other stuff
ipup(1)
ipdb - ipdb-update.sh - Tools for generating IP based Geo-blocking and Geo-routing tables in order to configure the system's firewall and/or routing facilities .sp
ipython(1)
Tools for Interactive Computing in Python
irrtoolset-errors(1)
IRRToolSet error and warning messages
ivstools(1)
extract IVs from a pcap file or merges several .ivs files into one
ldapmodify(1), ldapadd(1)
LDAP modify entry and LDAP add entry tools
ldns-version(1)
print out the version of the ldns-library and tools on this system
libnutclient(3)
Network UPS Tools high-level client access library
libnutclient_commands(3), nutclient_get_device_commands(3), nutclient_has_device_command(3), nutclient_get_device_command_description(3), nutclient_execute_device_command(3)
Instant command related functions in Network UPS Tools high-level client access library
libnutclient_devices(3), nutclient_get_devices(3), nutclient_has_device(3), nutclient_get_device_description(3)
Device related functions in Network UPS Tools high-level client access library
libnutclient_general(3), nutclient_destroy(3), strarr_alloc(3), strarr_free(3)
General and utility functions in Network UPS Tools high-level client access library
libnutclient_misc(3), nutclient_authenticate(3), nutclient_logout(3), nutclient_device_login(3), nutclient_get_device_num_logins(3), nutclient_device_master(3), nutclient_device_forced_shutdown(3)
Miscellaneous functions in Network UPS Tools high-level client access library
libnutclient_tcp(3), nutclient_tcp_create_client(3), nutclient_tcp_is_connected(3), nutclient_tcp_disconnect(3), nutclient_tcp_reconnect(3), nutclient_tcp_set_timeout(3), nutclient_tcp_get_timeout(3)
TCP protocol related function for Network UPS Tools high-level client access library
libnutclient_variables(3), nutclient_get_device_variables(3), nutclient_get_device_rw_variables(3), nutclient_has_device_variable(3), nutclient_get_device_variable_description(3), nutclient_get_device_variable_values(3), nutclient_set_device_variable_value(3), nutclient_set_device_variable_values(3)
Variable related functions in Network UPS Tools high-level client access library
ltldo(1)
run LTL/PSL formulas through other tools
mb2txt(1), txt2mb(1)
fcitx table related tools
mdb-hexdump(1)
Hexdump utility from MDB Tools
mdb-sql(1)
SQL interface to MDB Tools
megarc(5)
Configuration file for megatools
megatools(7)
Mega.nz command line tools
mfsarchive(1)
MooseFS archive storage mode management tools
mfsdiagtools(1)
MooseFS diagnostic tools
mfseattr(1)
MooseFS extra attributes management tools
mfsgoal(1)
MooseFS goal management tools
mfsquota(1)
MooseFS quota management tools
mfssclass(1)
MooseFS storage classes management tools
mfssnapshots(1)
MooseFS snapshot tools
mfstools(1)
perform MooseFS-specific operations
mfstrashtime(1)
MooseFS trash time (retention) management tools
mk-configure(7)
lightweight replacement for GNU autotools
mtools(1)
utilities to access DOS disks in Unix. '" t TQ \$1 . (is' (if` (pd"
mtools(5), mtools.conf(5)
mtools configuration files '" t TQ \$1 . (is' (if` (pd" St Mtools 4.0.26
mtoolstest(1)
tests and displays the configuration '" t TQ \$1 . (is' (if` (pd"
mu(1)
a set of tools to deal with Maildirs and message files, in particular to index and search e-mail messages
mu(1)
extract is the mu command to display and save message parts (attachments), and open them with other tools
ncid_tools(7)
NCID tools overview
ntfsprogs(8)
tools for doing neat things with NTFS
nut.conf(5)
UPS definitions for Network UPS Tools
nutscan(3)
Network UPS Tools (NUT) device discovery library
opam(1)
admin N'45' Tools for repository administrators
pathalias(8), makedb(8)
mail routing tools
phoa2d(1), phod2a(1)
gcin's Bopomofo tools
pkgdb(1), pkg_which(1)
tools to manage and search the package database
pkgtools.conf(5)
configuration file for the pkgtools suite
port(1)
FreeBSD Port Tools front-end script
portsdb(1), ports_glob(1)
tools to manage and look up the ports database file
porttools(5), ~/.porttools(5)
FreeBSD Port Tools configuration file
portupgrade(1), portinstall(1)
tools to upgrade installed packages or install new ones via ports or packages
pprof(1)
manual page for pprof (part of gperftools)
psfpages(1)
list codepages known to the PSF Tools
puttygen(1)
public-key generator for the PuTTY tools
rabbitmq-diagnostics(8)
RabbitMQ diagnostics, monitoring and health checks tools
rabbitmq-queues(8)
RabbitMQ queue management tools
rabbitmq-upgrade(8)
RabbitMQ installation upgrade tools
rletopnm(1)
convert a Utah Raster Tools RLE image file to a PNM image file. synopsis
runtools_intro(8)
overview of the runtools utilities
samesame(1)
introduction to the samesame tools
samtools(1)
Utilities for the Sequence Alignment/Map (SAM) format EX in +\$1 nf ft CR . EE ft fi in
samtools-addreplacerg(1), samtools addreplacerg(1)
adds or replaces read group tags EX in +\$1 nf ft CR . EE ft fi in
samtools-ampliconclip(1), samtools ampliconclip(1)
clip reads using a BED file EX in +\$1 nf ft CR . EE ft fi in
samtools-ampliconstats(1), samtools ampliconstats(1)
produces statistics from amplicon sequencing alignment file EX in +\$1 nf ft CR . EE ft fi in
samtools-bedcov(1), samtools bedcov(1)
reports coverage over regions in a supplied BED file EX in +\$1 nf ft CR . EE ft fi in
samtools-calmd(1), samtools calmd(1)
calculates MD and NM tags EX in +\$1 nf ft CR . EE ft fi in
samtools-cat(1), samtools cat(1)
concatenate files together EX in +\$1 nf ft CR . EE ft fi in
samtools-collate(1), samtools collate(1)
shuffles and groups reads together by their names EX in +\$1 nf ft CR . EE ft fi in
samtools-coverage(1), samtools coverage(1)
produces a histogram or table of coverage per chromosome EX in +\$1 nf ft CR . EE ft fi in
samtools-depad(1), samtools depad(1)
convert padded BAM to unpadded BAM EX in +\$1 nf ft CR . EE ft fi in
samtools-depth(1), samtools depth(1)
computes the read depth at each position or region EX in +\$1 nf ft CR . EE ft fi in
samtools-dict(1), samtools dict(1)
create a sequence dictionary file from a fasta file EX in +\$1 nf ft CR . EE ft fi in
samtools-faidx(1), samtools faidx(1)
indexes or queries regions from a fasta file EX in +\$1 nf ft CR . EE ft fi in
samtools-fasta(1), samtools fasta / fastq(1)
converts a SAM/BAM/CRAM file to FASTA or FASTQ EX in +\$1 nf ft CR . EE ft fi in
samtools-fixmate(1), samtools fixmate(1)
fills in mate coordinates and insert size fields. EX in +\$1 nf ft CR . EE ft fi in
samtools-flags(1), samtools flags(1)
convert between textual and numeric flag representation. EX in +\$1 nf ft CR . EE ft fi in
samtools-flagstat(1), samtools flagstat(1)
counts the number of alignments for each FLAG type EX in +\$1 nf ft CR . EE ft fi in
samtools-fqidx(1), samtools fqidx(1)
Indexes or queries regions from a fastq file EX in +\$1 nf ft CR . EE ft fi in
samtools-idxstats(1), samtools idxstats(1)
reports alignment summary statistics EX in +\$1 nf ft CR . EE ft fi in
samtools-index(1), samtools index(1)
indexes SAM/BAM/CRAM files EX in +\$1 nf ft CR . EE ft fi in
samtools-markdup(1), samtools markdup(1)
mark duplicate alignments in a coordinate sorted file EX in +\$1 nf ft CR . EE ft fi in
samtools-merge(1), samtools merge(1)
merges multiple sorted input files into a single output. EX in +\$1 nf ft CR . EE ft fi in
samtools-mpileup(1), samtools mpileup(1)
produces "pileup" textual format from an alignment EX in +\$1 nf ft CR . EE ft fi in
samtools-phase(1), samtools phase(1)
call and phase heterozygous SNPS EX in +\$1 nf ft CR . EE ft fi in
samtools-quickcheck(1), samtools quickcheck(1)
a rapid sanity check on input files EX in +\$1 nf ft CR . EE ft fi in
samtools-reheader(1), samtools reheader(1)
replaces the header in the input file EX in +\$1 nf ft CR . EE ft fi in
samtools-rmdup(1), samtools rmdup(1)
removes duplicate reads (obsolete) EX in +\$1 nf ft CR . EE ft fi in
samtools-sort(1), samtools sort(1)
sorts SAM/BAM/CRAM files EX in +\$1 nf ft CR . EE ft fi in
samtools-split(1), samtools split(1)
splits a file by read group. EX in +\$1 nf ft CR . EE ft fi in
samtools-stats(1), samtools stats(1)
produces comprehensive statistics from alignment file EX in +\$1 nf ft CR . EE ft fi in
samtools-targetcut(1), samtools targetcut(1)
cut fosmid regions (for fosmid pool only) EX in +\$1 nf ft CR . EE ft fi in
samtools-tview(1), samtools tview(1)
display alignments in a curses-based interactive viewer. EX in +\$1 nf ft CR . EE ft fi in
samtools-view(1), samtools view(1)
views and converts SAM/BAM/CRAM files EX in +\$1 nf ft CR . EE ft fi in
sgmlpre(1)
handle SGML conditionalization for SGML-tools
smlnj(7)
an implementation of the Standard ML language with supporting tools and libraries
snmpcmd(1)
options and behaviour common to most of the Net-SNMP command-line tools
spot(7)
Command-line tools installed by Spot
ss-tunnel(1)
shadowsocks tools for local port forwarding, libev port
tsa2d32(1), tsd2a32(1), tsd2a(1), tsin2gtab-phrase(1)
gcin's Tsin tools
uctags-client-tools(7), ctags-client-tools(7)
Hints for developing a tool using uctags command and tags output
update-smart-drivedb(8)
update smartmontools drive database
ups.conf(5)
UPS definitions for Network UPS Tools
upsclient(3)
Network UPS Tools client access library
upsd.conf(5)
Configuration for Network UPS Tools upsd
upsmon.conf(5)
Configuration for Network UPS Tools upsmon
valgrind(1)
a suite of tools for debugging and profiling programs
variables(5)
Format of specifying variable names to SNMP tools
vcftools(1), vcftools v0.1.16(1)
Utilities for the variant call format (VCF) and binary variant call format (BCF)
votca-tools(7)
The basic tools library of the VOTCA package
xtp_tools(1)
Part of the VOTCA package
yarn(1)
scenario testing of Unix command line tools
yuv4mpeg(5), YUV4MPEG2(5)
video stream format used by pipe-based MJPEGtools libmjpegutils yuv4mpeg.h YUV4MPEG YUV4MPEG2
yuvmedianfilter(1)
A filter for yuv images produced by the mjpeg tools
Alien::Build::Plugin::Extract::CommandLine(3)
Plugin to extract an archive using command line tools
Alien::Build::Plugin::Probe::CommandLine(3)
Probe for tools or commands already available
App::GitHub(3)
GitHub Command Tools
App::Yath::Options(3)
Tools for defining and tracking yath CLI options
App::Yath::Tester(3)
Tools for testing yath
Audio::M4P(3)
-- Perl QuickTime / MP4 / iTunes Music Store audio / video file tools
Audio::M4P::QuickTime(3)
-- Perl M4P/MP4/M4a audio / video tools
Bio::NEXUS::Tools::GraphicsParams(3), Graphics(3)
represents a character block (Data or Characters) of a NEXUS file
Bio::NEXUS::Tools::NexModifier(3), Bio::NEXUS::Tools::Modifier(3)
NEXUS file content modifier ( exclude/select/rename options on OTUs)
Bio::NEXUS::Tools::NexPlotter(3), nexplot.pl(3)
PostScript plot of tree + data table (from NEXUS infile) =head1 SYNOPSIS nexplot.pl [options] foo.nex [tree_name] > foo.ps =head1 OPTIONS -h Brief help message -d Full documentation -v Verbose mode -V Print version information and quit -f Specify output file (default: STDOUT) INFORMATION TO DISPLAY -b Turn on bootstrap values, if any -i Turn on internal node labeling -t Tree only (ignore any characters) -I Specify character block (by "Title") to be used in matrix (e.g. "dna", "protein", "intron") -m Matrix only (ignore any trees) -c Cladogram mode: (auto if no branch lengths present in tree) normal: all branch lengths equal accelerated: same as normal except OTUs are aligned at end -U Display taxa sets in color (-U "set1 color1 [set2 color2 ...]") Color options are red, orange, green, forest, aqua, blue, purple, pink, brown, gray, black PLOT FORMATTING -r Right-justify labels (default: left-justified) -C Columns of characters per block (default = 10) -T Specify tree width (longest branch; default: 10") -S Spacing (vertically) between OTUs (default: .25") -R Ratio of font height to Spacing (default: 0.8; rec: 0.5-1) -F Font to use for labels and titles -B Draw a box indicating postscriptes bounds of the plot area -g Include gray lines after OTU labels, even if -t (tree only) option is used PAGE SETUP -s Print on multiple pages, but shrink to page height -o Print on multiple pages at actual size -W Specify output page width (default: 8.5") -H Specify output page height (default: 11") -a Change page dimensions to fit plot =head1 DESCRIPTION B<This program> will read a NEXUS file and output a PostScript display of trees (one file for each tree in the tree block), as well as any character matrix (e.g. sequences) if present in the file. =head1 FILES =over 4 =back =head1 VERSION $Id: NexPlotter.pm,v 1.2 2008/06/16 19:53:41 astoltzfus Exp $
Bio::SeqFeature::Tools::FeatureNamer(3)
generates unique persistent names for features
Bio::SeqFeature::Tools::IDHandler(3)
maps $seq_feature->primary_tag
Bio::SeqFeature::Tools::TypeMapper(3)
maps $seq_feature->primary_tag
Bio::SeqFeature::Tools::Unflattener(3)
turns flat list of genbank-sourced features into a nested SeqFeatureI hierarchy
Bio::Tools::Alignment::Consed(3)
A module to work with objects from consed .ace files
Bio::Tools::Alignment::Trim(3)
A kludge to do specialized trimming of sequence based on quality
Bio::Tools::AmpliconSearch(3)
Find amplicons in a template using degenerate PCR primers
Bio::Tools::Analysis::SimpleAnalysisBase(3)
abstract superclass for SimpleAnalysis implementations
Bio::Tools::AnalysisResult(3)
Base class for analysis result objects and parsers
Bio::Tools::Blat(3)
parser for Blat program
Bio::Tools::CodonTable(3)
Codon table object
Bio::Tools::Coil(3)
parser for Coil output
Bio::Tools::ECnumber(3)
representation of EC numbers (Enzyme Classification)
Bio::Tools::EMBOSS::Palindrome(3)
parse EMBOSS palindrome output
Bio::Tools::EPCR(3)
Parse ePCR output and make features
Bio::Tools::ESTScan(3)
Results of one ESTScan run
Bio::Tools::Eponine(3)
Results of one Eponine run
Bio::Tools::Est2Genome(3)
Parse est2genome output, makes simple Bio::SeqFeature::Generic objects
Bio::Tools::Fgenesh(3)
parse results of one Fgenesh run
Bio::Tools::FootPrinter(3)
write sequence features in FootPrinter format
Bio::Tools::GFF(3)
A Bio::SeqAnalysisParserI compliant GFF format parser
Bio::Tools::Geneid(3)
Results of one geneid run
Bio::Tools::Genemark(3)
Results of one Genemark run
Bio::Tools::Genewise(3)
Results of one Genewise run
Bio::Tools::Genomewise(3)
Results of one Genomewise run
Bio::Tools::Genscan(3)
Results of one Genscan run
Bio::Tools::Glimmer(3)
parser for Glimmer 2.X/3.X prokaryotic and GlimmerM/GlimmerHMM eukaryotic gene predictions
Bio::Tools::Grail(3)
Results of one Grail run
Bio::Tools::GuessSeqFormat(3)
Module for determining the sequence format of the contents of a file, a string, or through a filehandle
Bio::Tools::IUPAC(3)
Generates unique sequence objects or regular expressions from an ambiguous IUPAC sequence
Bio::Tools::Lucy(3)
Object for analyzing the output from Lucy, a vector and quality trimming program from TIGR
Bio::Tools::MZEF(3)
Results of one MZEF run
Bio::Tools::Match(3)
Parses output from Transfac's match(TM)
Bio::Tools::OddCodes(3)
Object holding alternative alphabet coding for one protein sequence
Bio::Tools::Phylo::Gerp(3)
Parses output from GERP
Bio::Tools::Phylo::Molphy(3)
parser for Molphy output
Bio::Tools::Phylo::Molphy::Result(3)
container for data parsed from a ProtML run
Bio::Tools::Phylo::Phylip::ProtDist(3)
parser for ProtDist output
Bio::Tools::Prediction::Exon(3)
A predicted exon feature
Bio::Tools::Prediction::Gene(3)
a predicted gene structure feature
Bio::Tools::Primer3(3)
Create input for and work with the output from the program primer3
Bio::Tools::Primer::Assessor::Base(3)
base class for common assessor things
Bio::Tools::Primer::AssessorI(3)
interface for assessing primer pairs
Bio::Tools::Primer::Feature(3)
position of a single primer
Bio::Tools::Primer::Pair(3)
two primers on left and right side
Bio::Tools::Prints(3)
Parser for FingerPRINTScanII program
Bio::Tools::Profile(3)
parse Profile output
Bio::Tools::Promoterwise(3)
parser for Promoterwise tab format output
Bio::Tools::PrositeScan(3)
Parser for ps_scan result
Bio::Tools::Pseudowise(3)
Results of one Pseudowise run
Bio::Tools::QRNA(3)
A Parser for qrna output
Bio::Tools::RandomDistFunctions(3)
A set of routines useful for generating random data in different distributions
Bio::Tools::RepeatMasker(3)
a parser for RepeatMasker output
Bio::Tools::Run::Alignment::Amap(3)
Object for the calculation of an iterative multiple sequence alignment from a set of unaligned sequences or alignments using the Amap (2.0) program
Bio::Tools::Run::Alignment::DBA(3)
Object for the alignment of two sequences using the DNA Block Aligner program
Bio::Tools::Run::Alignment::Gmap(3)
Wrapper for running gmap
Bio::Tools::Run::Alignment::Kalign(3)
Object for the calculation of an iterative multiple sequence alignment from a set of unaligned sequences or alignments using the KALIGN program
Bio::Tools::Run::Alignment::Lagan(3)
Object for the local execution of the LAGAN suite of tools (including MLAGAN for multiple sequence alignments)
Bio::Tools::Run::Alignment::MAFFT(3)
run the MAFFT alignment tools
Bio::Tools::Run::Alignment::MSAProbs(3)
Object for the calculation of a multiple sequence alignment (MSA) from a set of unaligned sequences using the MSAProbs program
Bio::Tools::Run::Alignment::Muscle(3)
Object for the calculation of an iterative multiple sequence alignment from a set of unaligned sequences or alignments using the MUSCLE program
Bio::Tools::Run::Alignment::Pal2Nal(3)
Wrapper for Pal2Nal
Bio::Tools::Run::Alignment::Probalign(3)
Object for the calculation of a multiple sequence alignment from a set of unaligned sequences or alignments using the Probalign program
Bio::Tools::Run::Alignment::Probcons(3)
Object for the calculation of an iterative multiple sequence alignment from a set of unaligned sequences or alignments using the Probcons program
Bio::Tools::Run::Alignment::Proda(3)
Object for the calculation of sets of multiple sequence alignments from a set of unaligned sequences or alignments using the Proda program
Bio::Tools::Run::Alignment::Sim4(3)
Wrapper for Sim4 program that allows for alignment of cdna to genomic sequences
Bio::Tools::Run::Alignment::StandAloneFasta(3)
Object for the local execution of the Fasta3 programs ((t)fasta3, (t)fastx3, (t)fasty3 ssearch3)
Bio::Tools::Run::Analysis(3)
Module representing any (remote or local) analysis tool
Bio::Tools::Run::Analysis::soap(3)
A SOAP-based access to the analysis tools
Bio::Tools::Run::AnalysisFactory(3)
A directory of analysis tools
Bio::Tools::Run::AnalysisFactory::soap(3)
A SOAP-based access to the list of analysis tools
Bio::Tools::Run::BEDTools(3)
Run wrapper for the BEDTools suite of programs *BETA*
Bio::Tools::Run::BEDTools::Config(3)
Configuration data for bowtie commands
Bio::Tools::Run::BlastPlus(3)
A wrapper for NCBI's blast+ suite
Bio::Tools::Run::Coil(3)
wrapper for ncoils program
Bio::Tools::Run::EMBOSSApplication(3)
class for EMBOSS Applications
Bio::Tools::Run::EMBOSSacd(3)
class for EMBOSS Application qualifiers
Bio::Tools::Run::ERPIN(3)
Wrapper for local execution of the ERPIN suite of programs
Bio::Tools::Run::Ensembl(3)
A simplified front-end for setting up the registry for, and then using an Ensembl database with the Ensembl Perl API
Bio::Tools::Run::Eponine(3)
Object for execution of the Eponine which is a mammalian TSS predictor
Bio::Tools::Run::FootPrinter(3)
wrapper for the FootPrinter program
Bio::Tools::Run::Genemark(3)
Wrapper for local execution of the GeneMark family of programs
Bio::Tools::Run::GenericParameters(3)
An object for the parameters used to run programs
Bio::Tools::Run::Genewise(3)
Object for predicting genes in a given sequence given a protein
Bio::Tools::Run::Genscan(3)
Object for identifying genes in a given sequence given a matrix(for appropriate organisms)
Bio::Tools::Run::Glimmer(3)
Wrapper for local execution of Glimmer, GlimmerM and GlimmerHMM
Bio::Tools::Run::Hmmer(3)
Wrapper for local execution of hmmalign, hmmbuild, hmmcalibrate, hmmemit, hmmpfam, hmmsearch
Bio::Tools::Run::Infernal(3)
Wrapper for local execution of cmalign, cmbuild, cmsearch, cmscore
Bio::Tools::Run::MCS(3)
Wrapper for MCS
Bio::Tools::Run::Match(3)
Wrapper for Transfac's match(TM)
Bio::Tools::Run::Mdust(3), Mdust(3)
Perl extension for Mdust nucleotide filtering
Bio::Tools::Run::ParametersI(3)
A Base object for the parameters used to run programs
Bio::Tools::Run::Phylo::Gerp(3), Bio::Tools::Run::Gerp(3)
Wrapper for GERP
Bio::Tools::Run::Phylo::Hyphy::Base(3)
Hyphy wrapping base methods
Bio::Tools::Run::Phylo::Hyphy::BatchFile(3)
Wrapper for custom execution of Hyphy batch files
Bio::Tools::Run::Phylo::Hyphy::FEL(3)
Wrapper around the Hyphy FEL analysis
Bio::Tools::Run::Phylo::Hyphy::Modeltest(3)
Wrapper around the Hyphy Modeltest analysis
Bio::Tools::Run::Phylo::Hyphy::REL(3)
Wrapper around the Hyphy REL analysis
Bio::Tools::Run::Phylo::Hyphy::SLAC(3)
Wrapper around the Hyphy SLAC analysis
Bio::Tools::Run::Phylo::LVB(3)
Object for using the LVB program to create an array of Bio::Tree objects from a nucleotide multiple alignment file or a nucleotide SimpleAlign object. Works with LVB version 2.1
Bio::Tools::Run::Phylo::Molphy::ProtML(3)
A wrapper for the Molphy pkg app ProtML
Bio::Tools::Run::Phylo::Njtree::Best(3)
Wrapper around the Njtree (Njtree/phyml) best program
Bio::Tools::Run::Phylo::Phast::PhastCons(3)
Wrapper for footprinting using phastCons
Bio::Tools::Run::Phylo::Phast::PhyloFit(3)
Wrapper for phyloFit
Bio::Tools::Run::Phylo::Phylip::Base(3)
Base object for Phylip modules
Bio::Tools::Run::Phylo::Phylip::Consense(3)
Wrapper for the phylip program Consense
Bio::Tools::Run::Phylo::Phylip::DrawGram(3)
use Phylip DrawTree program to draw phylograms or phenograms
Bio::Tools::Run::Phylo::Phylip::DrawTree(3)
use Phylip DrawTree program to draw trees
Bio::Tools::Run::Phylo::Phylip::Neighbor(3)
Wrapper for the phylip program neighbor by Joseph Felsenstein for creating a phylogenetic tree(either through Neighbor or UPGMA) based on protein distances based on amino substitution rate. 14 Nov 2002 Shawn Works with Phylip version 3.6
Bio::Tools::Run::Phylo::Phylip::ProtDist(3)
Wrapper for the phylip program protdist
Bio::Tools::Run::Phylo::Phylip::ProtPars(3)
Object for creating a Bio::Tree object from a multiple alignment file or a SimpleAlign object 14 Nov 2002 Shawn Works with Phylip version 3.6
Bio::Tools::Run::Phylo::Phylip::SeqBoot(3)
Wrapper for the phylip program SeqBoot
Bio::Tools::Run::Phylo::PhyloBase(3), Bio::Tools::Run::Phylo::PhyloBase-(3)
base module for phylo wrappers
Bio::Tools::Run::Phylo::Phyml(3)
Wrapper for rapid reconstruction of phylogenies using Phyml
Bio::Tools::Run::Phylo::QuickTree(3)
Wrapper for rapid reconstruction of phylogenies using QuickTree
Bio::Tools::Run::Phylo::SLR(3)
Wrapper around the SLR program
Bio::Tools::Run::Phylo::Semphy(3)
Wrapper for Semphy
Bio::Tools::Run::Primate(3), Wrapper(3)
for Primate, Guy Slater's near exact match finder for short sequence tags
Bio::Tools::Run::Primer3(3)
Create input for and work with the output from the program primer3
Bio::Tools::Run::Promoterwise(3)
Wrapper for aligning two sequences using promoterwise
Bio::Tools::Run::Pseudowise(3)
Object for prediting pseudogenes in a given sequence given a protein and a cdna sequence
Bio::Tools::Run::RNAMotif(3)
Wrapper for local execution of rnamotif, rm2ct, rmfmt, rmprune
Bio::Tools::Run::RepeatMasker(3)
Wrapper for RepeatMasker Program
Bio::Tools::Run::Samtools(3)
a run wrapper for the samtools suite *BETA*
Bio::Tools::Run::Samtools::Config(3)
configurator for Bio::Tools::Run::Samtools
Bio::Tools::Run::Seg(3)
Object for identifying low complexity regions in a given protein seequence
Bio::Tools::Run::Simprot(3)
Wrapper around the Simprot program. Wrapper for the calculation of a multiple sequence alignment from a phylogenetic tree
Bio::Tools::Run::StandAloneBlast(3)
Object for the local execution of the NCBI BLAST program suite (blastall, blastpgp, bl2seq). There is experimental support for WU-Blast and NCBI rpsblast
Bio::Tools::Run::StandAloneBlastPlus(3)
Compute with NCBI's blast+ suite *ALPHA*
Bio::Tools::Run::StandAloneBlastPlus::BlastMethods(3)
Provides BLAST methods to StandAloneBlastPlus
Bio::Tools::Run::StandAloneNCBIBlast(3)
Object for the local execution of the NCBI BLAST program suite (blastall, blastpgp, bl2seq). With experimental support for NCBI rpsblast
Bio::Tools::Run::StandAloneWUBlast(3)
Object for the local execution of WU-Blast
Bio::Tools::Run::Tmhmm(3)
Object for identifying transmembrane helixes in a given protein seequence
Bio::Tools::Run::Vista(3)
Wrapper for Vista
Bio::Tools::Run::WrapperBase(3)
A Base object for wrappers around executables
Bio::Tools::Run::WrapperBase::CommandExts(3)
Extensions to WrapperBase for handling programs with commands *ALPHA*
Bio::Tools::Run::tRNAscanSE(3)
Wrapper for local execution of tRNAscan-SE
Bio::Tools::Seg(3)
parse "seg" output
Bio::Tools::SeqPattern(3)
represent a sequence pattern or motif
Bio::Tools::SeqPattern::Backtranslate(3)
reverse translate protein patterns
Bio::Tools::SeqStats(3)
Object holding statistics for one particular sequence
Bio::Tools::SeqWords(3)
Object holding n-mer statistics for a sequence
Bio::Tools::Sigcleave(3)
Bioperl object for sigcleave analysis
Bio::Tools::Signalp(3)
parser for Signalp output
Bio::Tools::Signalp::ExtendedSignalp(3)
enhanced parser for Signalp output
Bio::Tools::Sim4::Exon(3)
A single exon determined by an alignment
Bio::Tools::Sim4::Results(3)
Results of one Sim4 run
Bio::Tools::Spidey::Exon(3)
A single exon determined by an alignment
Bio::Tools::Spidey::Results(3)
Results of a Spidey run
Bio::Tools::TandemRepeatsFinder(3)
a parser for Tandem Repeats Finder output
Bio::Tools::TargetP(3)
Results of one TargetP run
Bio::Tools::Tmhmm(3)
parse TMHMM output (TransMembrane HMM)
Bio::Tools::ipcress(3)
Parse ipcress output and make features
Bio::Tools::isPcr(3)
Parse isPcr output and make features
Bio::Tools::pICalculator(3)
calculate the isoelectric point of a protein
Bio::Tools::tRNAscanSE(3)
A parser for tRNAscan-SE output
Catalyst::Devel(3)
Catalyst Development Tools
DBIx::Class::Migration(3)
Use the best tools together for sane database migrations
DBIx::Class::Migration::Script(3)
Tools to manage database Migrations
DNSCheck(3)
DNS Check Tools
Dist::Joseki(3)
Tools for the prolific module author
FFI::Platypus::Lang::ASM(3)
Documentation and tools for using Platypus with the Assembly
FFI::Platypus::Lang::C(3)
Documentation and tools for using Platypus with the C programming language
FFI::Platypus::Lang::Win32(3)
Documentation and tools for using Platypus with the Windows API
Gtk2::Ex::Dialogs(3)
Useful tools for Gnome2/Gtk2 Perl GUI design
Gtk2::ImageView::Tool(3)
Interface for objects capable of being used as tools by Gtk2::ImageView
Gtk2::ToolShell(3)
wrapper for GtkToolShell
HTML::Mason::Tools(3)
Function library used internally in Mason
Jifty::Web::Form(3)
Tools for rendering and dealing with HTML forms
Lingua::Han::Utils(3)
The utility tools of Chinese character(HanZi)
MIME::Tools(3), MIME-tools(3)
modules for parsing (and creating!) MIME entities
MailTools(3)
bundle of ancient email modules
Meta::Builder(3)
Tools for creating Meta objects to track custom metrics
Module::Util(3)
Module name tools and transformations
MooX::Options::Manual::MooXCmd(3)
Manage your tools with MooX::Cmd
Net::AMQP::Common(3)
A collection of exportable tools for AMQP (de)serialization
Net::Amazon::Validate::ItemSearch::de::Tools(3)
valid search indicies for the de locale and the Tools SearchIndex
Net::Amazon::Validate::ItemSearch::us::Tools(3)
valid search indicies for the us locale and the Tools SearchIndex
Net::DNS::ToolKit(3)
tools for working with DNS packets
Net::DNS::ToolKit::Debug(3)
ToolKit print tools
Net::OpenStack::Attack(3)
Tools for stress testing an OpenStack deployment
Net::UPS(3)
Implementation of UPS Online Tools API in Perl
Net::UPS::Tutorial(3)
Simple class implementing UPSOnlineTools API
OpenXPKI::Crypto::Toolkit(3), Header "Name" OpenXPKI::Crypto::Toolkit(3)
an ABSTRACT superclass for Backends and Tools
OpenXPKI::DateTime(3), Header "Name" OpenXPKI::DateTime(3)
tools to handle various date and timestamp formats
OpenXPKI::Server::Workflow::Activity::CertRenewal::DetermineSubjectStyle(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::DetermineSubjectStyle
OpenXPKI::Server::Workflow::Activity::Tools::AddCertExtension(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::AddCertExtension
OpenXPKI::Server::Workflow::Activity::Tools::AppendCertificateMetadata(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::AppendCertificateMetadata
OpenXPKI::Server::Workflow::Activity::Tools::Approve(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::Approve
OpenXPKI::Server::Workflow::Activity::Tools::CRLExport(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::CRLExport
OpenXPKI::Server::Workflow::Activity::Tools::CalculateApprovalPoints(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::CalculateApprovalPoints
OpenXPKI::Server::Workflow::Activity::Tools::CancelApprovals(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::CancelApprovals
OpenXPKI::Server::Workflow::Activity::Tools::CertificateExport(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::CertificateExport
OpenXPKI::Server::Workflow::Activity::Tools::CertificateExportArchive(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::CertificateExportArchive
OpenXPKI::Server::Workflow::Activity::Tools::Connector::GetValue(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::Connector::GetValue
OpenXPKI::Server::Workflow::Activity::Tools::CopyCertificateMetadata(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::CopyCertificateMetadata
OpenXPKI::Server::Workflow::Activity::Tools::CopyContextFromWorkflow(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::CopyContextFromWorkflow
OpenXPKI::Server::Workflow::Activity::Tools::Datapool::DeleteEntry(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::Datapool::DeleteEntry
OpenXPKI::Server::Workflow::Activity::Tools::Datapool::GetEntry(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::Datapool::GetEntry
OpenXPKI::Server::Workflow::Activity::Tools::Datapool::ModifyEntry(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::Datapool::ModifyEntry
OpenXPKI::Server::Workflow::Activity::Tools::Datapool::SetEntry(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::Datapool::SetEntry
OpenXPKI::Server::Workflow::Activity::Tools::Disconnect(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::Disconnect;
OpenXPKI::Server::Workflow::Activity::Tools::EvaluateEligibility(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::EvaluateEligibility
OpenXPKI::Server::Workflow::Activity::Tools::ExportToFile(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::ExportToFile
OpenXPKI::Server::Workflow::Activity::Tools::GenerateKey(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::GenerateKey
OpenXPKI::Server::Workflow::Activity::Tools::GeneratePassword(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::GeneratePassword
OpenXPKI::Server::Workflow::Activity::Tools::GetCertificateIdentifier(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::GetCertificateIdentifier
OpenXPKI::Server::Workflow::Activity::Tools::InjectExtraParam(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::InjectExtraParam
OpenXPKI::Server::Workflow::Activity::Tools::ListActiveToken(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::ListActiveToken
OpenXPKI::Server::Workflow::Activity::Tools::LoadCertificateMetadata(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::LoadCertificateMetadata;
OpenXPKI::Server::Workflow::Activity::Tools::LoadPolicy(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::LoadPolicy
OpenXPKI::Server::Workflow::Activity::Tools::MergeContextHash(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::MergeContextHash
OpenXPKI::Server::Workflow::Activity::Tools::Notify(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::Notify
OpenXPKI::Server::Workflow::Activity::Tools::ParseCertificate(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::ParseCertificate
OpenXPKI::Server::Workflow::Activity::Tools::ParseCertificateBundle(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::ParseCertificateBundle
OpenXPKI::Server::Workflow::Activity::Tools::ParsePKCS10(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::ParsePKCS10
OpenXPKI::Server::Workflow::Activity::Tools::Pause(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::Pause;
OpenXPKI::Server::Workflow::Activity::Tools::PrepareRenewal(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::PrepareRenewal
OpenXPKI::Server::Workflow::Activity::Tools::PresetProfileFields(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::PresetProfileFields
OpenXPKI::Server::Workflow::Activity::Tools::PublishCA(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::PublishCA
OpenXPKI::Server::Workflow::Activity::Tools::PublishCRL(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::PublishCRLs
OpenXPKI::Server::Workflow::Activity::Tools::PublishCertificate(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::PublishCertificate
OpenXPKI::Server::Workflow::Activity::Tools::RelateWorkflow(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::RelateWorkflow;
OpenXPKI::Server::Workflow::Activity::Tools::RenameContext(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::RenameContext
OpenXPKI::Server::Workflow::Activity::Tools::RenderSubject(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::RenderSubject;
OpenXPKI::Server::Workflow::Activity::Tools::RevokeCertificate(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::RevokeCertificate;
OpenXPKI::Server::Workflow::Activity::Tools::SearchWorkflow(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::SearchWorkflow
OpenXPKI::Server::Workflow::Activity::Tools::SetAttribute(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::SetAttribute
OpenXPKI::Server::Workflow::Activity::Tools::SetContext(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::SetContext
OpenXPKI::Server::Workflow::Activity::Tools::SetContextHash(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::SetContextHash
OpenXPKI::Server::Workflow::Activity::Tools::SetCreator(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::SetCreator
OpenXPKI::Server::Workflow::Activity::Tools::SetErrorCode(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::SetErrorCode
OpenXPKI::Server::Workflow::Activity::Tools::SetSource(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::SetSource
OpenXPKI::Server::Workflow::Activity::Tools::SetStatusMessage(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::SetStatusMessage
OpenXPKI::Server::Workflow::Activity::Tools::StringToArray(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::StringToArray
OpenXPKI::Server::Workflow::Activity::Tools::TriggerCertificatePublish(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::TriggerCertificatePublish
OpenXPKI::Server::Workflow::Activity::Tools::UpdateContextHash(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::UpdateContextHash
OpenXPKI::Server::Workflow::Activity::Tools::ValidateChallengePassword(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::ValidateChallengePassword
OpenXPKI::Server::Workflow::Activity::Tools::WFArray(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::WFArray
OpenXPKI::Server::Workflow::Activity::Tools::WFHash(3), Header(3)
"Name" OpenXPKI::Server::Workflow::Activity::Tools::WFHash
PPIx::EditorTools(3)
Utility methods and base class for manipulating Perl via PPI
PPIx::EditorTools::FindUnmatchedBrace(3)
PPI-based unmatched-brace-finder
PPIx::EditorTools::FindVariableDeclaration(3)
Finds where a variable was declared using PPI
PPIx::EditorTools::IntroduceTemporaryVariable(3)
Introduces a temporary variable using PPI
PPIx::EditorTools::Lexer(3)
Simple Lexer used for syntax highlighting
PPIx::EditorTools::Outline(3)
Collect use pragmata, modules, subroutiones, methods, attributes
PPIx::EditorTools::RenamePackage(3)
Change the package name
PPIx::EditorTools::RenamePackageFromPath(3)
Change the package name based on the files path
PPIx::EditorTools::RenameVariable(3)
Lexically replace a variable name in Perl code
PPIx::EditorTools::ReturnObject(3)
Simple object to return values from PPIx::EditorTools
PTinfo(1)
Display information about a panotools-generated image
Plugtools(3)
LDAP and Posix
Plugtools::Plugins::Dump(3)
A Plugtools plugin that calls Data::Dumper->Dumper on %opts and %args that are passed to the plugin
Plugtools::Plugins::HomeOU(3)
Creates the home OU for a user
Plugtools::Plugins::HomeOUremove(3)
Remove the home OU for a user
Prima::sys::Test(3)
GUI test tools
SGML::Parser::OpenSP::Tools(3)
Tools to process OpenSP output
SQL::Translator::Parser::Access(3)
parser for Access as produced by mdbtools
SVK::Command::Admin(3)
Administration tools
Template::Tools(3)
Command Line Tools for the Template Toolkit
Template::Tools::tpage(3)
Process templates from command line
Template::Tools::ttree(3)
Process entire directory trees of templates
Test2(3)
Framework for writing test tools that all work together
Test2::API(3)
Primary interface for writing Test2 based testing tools
Test2::API::InterceptResult::Event(3)
Representation of an event for use in testing other test tools
Test2::Compare(3)
Test2 extension for writing deep comparison tools
Test2::Harness::Runner::Preload(3)
DSL for building complex stage-based preload tools
Test2::Manual::Tooling::Nesting(3)
Tutorial for using other tools within your own
Test2::Manual::Tooling::Plugin::ToolStarts(3)
How to add behaviors that occur when a tool starts work
Test2::Manual::Tooling::Testing(3)
Tutorial on how to test your testing tools
Test2::Suite(3)
Distribution with a rich set of tools built upon the Test2 framework
Test2::Tools(3)
Documentation for Tools
Test2::Tools::AsyncSubtest(3)
Tools for writing async subtests
Test2::Tools::Basic(3)
Test2 implementation of the basic testing tools
Test2::Tools::Class(3)
Test2 implementation of the tools for testing classes
Test2::Tools::ClassicCompare(3)
Classic (Test::More style) comparison tools
Test2::Tools::Compare(3)
Tools for comparing deep data structures
Test2::Tools::Defer(3)
Write tests that get executed at a later time
Test2::Tools::Encoding(3)
Tools for managing the encoding of Test2 based tests
Test2::Tools::Event(3)
Tools for generating test events
Test2::Tools::Exception(3)
Test2 based tools for checking exceptions
Test2::Tools::Explain(3)
-- Explain tools for Perl's Test2 framework
Test2::Tools::Exports(3)
Tools for validating exporters
Test2::Tools::GenTemp(3)
Tool for generating a populated temp directory
Test2::Tools::Grab(3)
Temporarily intercept all events without adding a scope level
Test2::Tools::HarnessTester(3)
Run events through a harness for a summary
Test2::Tools::Mock(3)
Class/Instance mocking for Test2
Test2::Tools::Ref(3)
Tools for validating references
Test2::Tools::Spec(3)
RSPEC implementation on top of Test2::Workflow
Test2::Tools::Subtest(3)
Tools for writing subtests
Test2::Tools::Target(3)
Alias the testing target package
Test2::Tools::Tester(3)
Tools to help you test other testing tools
Test2::Tools::Tiny(3)
Tiny set of tools for unfortunate souls who cannot use Test2::Suite
Test2::Tools::Warnings(3)
Tools to verify warnings
Test2::Util(3)
Tools used by Test2 and friends
Test2::Util::ExternalMeta(3)
Allow third party tools to safely attach meta-data to your instances
Test2::Util::Ref(3)
Tools for inspecting or manipulating references
Test2::Util::Sub(3)
Tools for inspecting and manipulating subs
Test::Alien(3)
Testing tools for Alien modules
Test::Alien::Build(3)
Tools for testing Alien::Build + alienfile
Test::DZil(3)
tools for testing Dist::Zilla plugins
Test::Moose::More(3)
More tools for testing Moose packages
Test::Taint(3)
Tools to test taintedness
ToolSet(3)
Load your commonly-used modules in a single import
ToolSet::SWC(3)
Sample toolset with strict, warnings and Carp
WordNet::Tools(3)
Some tools for use with WordNet
XML::Atom::Filter(3)
easy creation of command line Atom processing tools
XML::Toolkit(3)
A suit of XML tools with Antlers
XML::Toolkit::Builder(3)
A set of tools for Building XML Classes via XML::SAX Streams
XML::Toolkit::Generator(3)
A set of tools for converting Moose Objects into XML
XML::Toolkit::Loader(3)
A set of tools for Loading XML into Moose Objects
bk-config-gui(1), bk config-gui(1)
configuration for graphical tools
depdiagram-generate(1)
KDE API documentation generation tools
depdiagram-generate-all(1)
KDE API documentation generation tools
distfind(1), Dist::Joseki(1)
tools for the prolific module author
github.pl(1), github(1)
GitHub Command Tools
ipython(1)
Tools for Interactive Computing in Python
jmx4perl(1)
JMX access tools and modules
jstatd(1)
Monitors Java Virtual Machines (JVMs) and enables remote monitoring tools to attach to JVMs. This command is experimental and unsupported
mp3-archive-tools(1)
tools to maintain an archive of mp3 files
mp3lint-tools(3)
tools and tests available in mp3lint
opentool(1)
Command line tool for starting tools
percona-toolkit(1)
Advanced command-line tools for MySQL
perlfaq3(1)
Programming Tools
pldes(1), pl(1)
pldes, plser, plmerge, plparse, pl2link - property list tools
pt-align(1)
Align output from other tools to columns
r.li(1), r.li (1)
Toolset for multiscale analysis of landscape structure
runtime_tools(6)
The Runtime tools Application
systools(3)
A Set of Release Handling Tools
tpage(1), Template::Tools::tpage(1)
Process templates from command line
ttb(3)
A base for building trace tools for distributed systems
ttree(1), Template::Tools::ttree(1)
Process entire directory trees of templates
v.clean(1), v.clean (1)
Toolset for cleaning topology of vector map
xpdfrc(5)
configuration file for Xpdf tools (version 4.03)
home | help