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lsearch(3), lfind(3)
linear search and append
fasta36(1)
scan a protein or DNA sequence library for similar sequences fastx36 - compare a DNA sequence to a protein sequence database, comparing the translated DNA sequence in forward and reverse frames. tfastx36 - compare a protein sequence to a DNA sequence database, calculating similarities with frameshifts to the forward and reverse orientations. fasty36 - compare a DNA sequence to a protein sequence database, comparing the translated DNA sequence in forward and reverse frames. tfasty36 - compare a protein sequence to a DNA sequence database, calculating similarities with frameshifts to the forward and reverse orientations. fasts36 - compare unordered peptides to a protein sequence database fastm36 - compare ordered peptides (or short DNA sequences) to a protein (DNA) sequence database tfasts36 - compare unordered peptides to a translated DNA sequence database fastf36 - compare mixed peptides to a protein sequence database tfastf36 - compare mixed peptides to a translated DNA sequence database ssearch36 - compare a protein or DNA sequence to a sequence database using the Smith-Waterman algorithm. ggsearch36 - compare a protein or DNA sequence to a sequence database using a global alignment (Needleman-Wunsch) glsearch36 - compare a protein or DNA sequence to a sequence database with alignments that are global in the query and local in the database sequence (global-local). lalign36 - produce multiple non-overlapping alignments for protein and DNA sequences using the Huang and Miller sim algorithm for the Waterman-Eggert algorithm. prss36, prfx36 - discontinued; all the FASTA programs will estimate statistical significance using 500 shuffled sequence scores if two sequences are compared
lsearch.tcl85(n), lsearch(n)
See if a list contains a particular element
lsearch.tcl86(n), lsearch(n)
See if a list contains a particular element
lsearch.tcl87(n), lsearch(n)
See if a list contains a particular element
Math::IntervalSearch(3)
Search where an element lies in a list of sorted elements
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