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cheatmake(1)
fool make into not rebuilding certain files
foobillard(6)
OpenGL billard game
foomatic-addpjloptions(8)
Format PJL option information the for foomatic database
foomatic-combo-xml(1)
<put a short description here>
foomatic-compiledb(1)
Compile the Foomatic printer/driver database
foomatic-configure(1)
the main configuration program of the foomatic printing system
foomatic-getpjloptions(8)
<put a short description here>
foomatic-kitload(8)
installs a data kit into the foomatic database
foomatic-perl-data(1)
generate Perl data structures from XML
foomatic-ppd-options(1)
show the PPD options
foomatic-ppdfile(1)
Generate a PPD file for a given printer/driver combo
foomatic-preferred-driver(8)
<put a short description here>
foomatic-printjob(1)
manage printer jobs in a spooler-independent fashion
foomatic-rip(1)
Universal print filter/RIP wrapper
foremost(8)
Recover files using their headers, footers, and data structures
mailfoot(1)
a full-online-ordered-training simulator for use with dbacl
xfmpc(1)
graphical GTK+ MPD client focusing on low footprint
xymonpage.cgi(1), xymonpage(1)
Utility to show a webpage using header and footer
xymonweb(5), Xymon-Web-Templates(5)
web page headers, footers and forms
Acme::MetaSyntactic::foo(3)
The foo theme
Bio::NEXUS::Tools::NexPlotter(3), nexplot.pl(3)
PostScript plot of tree + data table (from NEXUS infile) =head1 SYNOPSIS nexplot.pl [options] foo.nex [tree_name] > foo.ps =head1 OPTIONS -h Brief help message -d Full documentation -v Verbose mode -V Print version information and quit -f Specify output file (default: STDOUT) INFORMATION TO DISPLAY -b Turn on bootstrap values, if any -i Turn on internal node labeling -t Tree only (ignore any characters) -I Specify character block (by "Title") to be used in matrix (e.g. "dna", "protein", "intron") -m Matrix only (ignore any trees) -c Cladogram mode: (auto if no branch lengths present in tree) normal: all branch lengths equal accelerated: same as normal except OTUs are aligned at end -U Display taxa sets in color (-U "set1 color1 [set2 color2 ...]") Color options are red, orange, green, forest, aqua, blue, purple, pink, brown, gray, black PLOT FORMATTING -r Right-justify labels (default: left-justified) -C Columns of characters per block (default = 10) -T Specify tree width (longest branch; default: 10") -S Spacing (vertically) between OTUs (default: .25") -R Ratio of font height to Spacing (default: 0.8; rec: 0.5-1) -F Font to use for labels and titles -B Draw a box indicating postscriptes bounds of the plot area -g Include gray lines after OTU labels, even if -t (tree only) option is used PAGE SETUP -s Print on multiple pages, but shrink to page height -o Print on multiple pages at actual size -W Specify output page width (default: 8.5") -H Specify output page height (default: 11") -a Change page dimensions to fit plot =head1 DESCRIPTION B<This program> will read a NEXUS file and output a PostScript display of trees (one file for each tree in the tree block), as well as any character matrix (e.g. sequences) if present in the file. =head1 FILES =over 4 =back =head1 VERSION $Id: NexPlotter.pm,v 1.2 2008/06/16 19:53:41 astoltzfus Exp $
Bio::Tools::FootPrinter(3)
write sequence features in FootPrinter format
Bio::Tools::Run::FootPrinter(3)
wrapper for the FootPrinter program
Bio::Tools::Run::Phylo::Phast::PhastCons(3)
Wrapper for footprinting using phastCons
ExtUtils::XSpp::Node::PercAny(3)
contains information about %Foo tags handled by plugins
Finance::Quote::Fool(3), Finance::Quote::Fool -(3)
Obtain quotes from the Motley Fool web site
HTML::FormHandler::Foo(3)
Experiment in loading form from config file
HTML::FormatText::WithLinks(3)
HTML to text conversion with links as footnotes
Jifty::Manual::Style(3)
Jifty coding style guide Default style Subsection "Default style" When in doubt, default to whatever Damian Conway's Perl Best Practices says. Private documentation Subsection "Private documentation" When documenting a private method, or providing documentation which is not useful to the user of the module (and is presumably useful to the developer), wrap it in =begin/end private. This way it does not show up in perldoc where a user would see it and yet is still available and well formatted (that is, not just a lump comment) when looking at the code. =begin private =head2 import_extra Called by L<Test::More>s C<import> code when L<Jifty::Test> is first C<use>d, it calls L</setup>, and asks Test::More to export its symbols to the namespace that C<use>d this one. =end private sub import_extra { ... } Test temp files Subsection "Test temp files" Files created by tests should be declared as such using Jifty::Test->test_file() so they are cleaned up on a successful test run. Use Shell::Command Subsection "Use Shell::Command" Shell::Command has a number of functions which work like common shell file commands such as touch, cp and mv. They are battle tested and cross-platform. Use them instead of coding your own. For example, instead of this: open my $file, ">foo"; close $file; Do this: use Shell::Command; touch $file; Case insensitive matching Subsection "Case insensitive matching" To check if a string equals another string case insensitively, do this lc $foo eq lc $bar; lc $foo eq bar; not this: $foo =~ /^eQ$bareE/i; $foo =~ /^bar$/i;
MojoMojo::Formatter::Markdown(3)
MultiMarkdown formatting for your content. MultiMarkdown is an extension of Markdown, adding support for tables, footnotes, bibliography, automatic cross-references, glossaries, appendices, definition lists, math syntax, anchor and image attributes, and document metadata. Markdown syntax: <http://daringfireball.net/projects/markdown/syntax> MultiMarkdown syntax: <http://fletcherpenney.net/multimarkdown/users_guide/multimarkdown_syntax_guide/>
MooseX::FollowPBP(3)
Name your accessors get_foo() and set_foo()
MooseX::SemiAffordanceAccessor(3)
Name your accessors foo() and set_foo()
Net::Amazon::Validate::ItemSearch::us::GourmetFood(3)
valid search indicies for the us locale and the GourmetFood SearchIndex
Net::RabbitFoot(3)
An Asynchronous and multi channel Perl AMQP client
Object::Enum(3)
replacement for "if ($foo eq bar)"
Perl::Critic::Policy::BuiltinFunctions::ProhibitLvalueSubstr(3)
Use 4-argument "substr" instead of writing "substr($foo, 2, 6) = $bar"
Perl::Critic::Policy::BuiltinFunctions::ProhibitStringyEval(3)
Write "eval { my $foo; bar($foo) }" instead of "eval "my $foo; bar($foo);""
Perl::Critic::Policy::BuiltinFunctions::ProhibitUniversalCan(3)
Write "eval { $foo->can($name) }" instead of "UNIVERSAL::can($foo, $name)"
Perl::Critic::Policy::BuiltinFunctions::ProhibitUniversalIsa(3)
Write "eval { $foo->isa($pkg) }" instead of "UNIVERSAL::isa($foo, $pkg)"
Perl::Critic::Policy::CodeLayout::ProhibitQuotedWordLists(3)
Write "qw(foo bar baz)" instead of "(foo, bar, baz)"
Perl::Critic::Policy::Documentation::RequireFilenameMarkup(3)
markup /foo filenames
Perl::Critic::Policy::InputOutput::RequireBracedFileHandleWithPrint(3)
Write "print {$FH} $foo, $bar;" instead of "print $FH $foo, $bar;"
Perl::Critic::Policy::ValuesAndExpressions::ProhibitBarewordDoubleColon(3)
don't use Foo:: style barewords
Perl::Critic::Policy::ValuesAndExpressions::ProhibitConstantPragma(3)
Don't "use constant FOO => 15"
Perl::Critic::Policy::ValuesAndExpressions::ProhibitMixedBooleanOperators(3)
Write " !$foo && $bar || $baz " instead of " not $foo && $bar or $baz"
Perl::Critic::Policy::Variables::ProhibitAugmentedAssignmentInDeclaration(3)
Do not write " my $foo .= bar; "
Perl::Critic::Policy::Variables::ProhibitConditionalDeclarations(3)
Do not write " my $foo = $bar if $baz; "
Perl::Critic::Policy::Variables::RequireInitializationForLocalVars(3)
Write "local $foo = $bar;" instead of just "local $foo;"
Reaction::UI::Widget::Collection::Grid(3)
A collection with header and footer
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