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FreeBSD Ports: Biology

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Software related to biology.

InsightToolkit-2.8.1_2
Insight Toolkit
Long description | Sources | Main Web Site
Maintained by: jwbacon@tds.net
Requires: cmake-2.8.10.2, cmake-modules-2.8.10.2
Also listed in: Science

adun-0.81_1
Molecular Simulator for GNUstep
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: aspell-0.60.6.1_2, ca_root_nss-3.14.3, cups-client-1.5.4_1, damageproto-1.2.1, dri2proto-2.6, expat-2.0.1_2, fixesproto-5.0, flac-1.2.1_3, fontconfig-2.9.0,1, freetype2-2.4.11, gcc-4.2.5.20090325_5, gettext-0.18.1.1_1, giflib-4.2.1_1, gmake-3.82_1, gmp-5.1.1, gnustep-back-0.22.0, gnustep-base-1.24.0_1, gnustep-gui-0.22.0, gnustep-make-2.6.2, gnutls-2.12.23_1, gsl-1.15_1, jbigkit-1.6, jpeg-8_4, kbproto-1.0.5, libGL-7.6.1_3, libGLU-7.6.1_2, libICE-1.0.7,1, libSM-1.2.0,1, libX11-1.4.4,1, libXau-1.0.6, libXdamage-1.1.3, libXdmcp-1.1.0, libXext-1.3.0_1,1, libXfixes-5.0, libXft-2.3.1, libXmu-1.1.0,1, libXrender-0.9.6, libXt-1.1.1,1, libXxf86vm-1.1.1, libao-1.1.0_1, libdrm-2.4.17_1, libffi-3.0.13, libgcrypt-1.5.0_1, libgpg-error-1.11, libiconv-1.14_1, libogg-1.3.0,4, libpciaccess-0.12.1, libpthread-stubs-0.3_3, libsndfile-1.0.25_2, libtasn1-2.14, libvorbis-1.3.3_1,3, libxcb-1.7, libxml2-2.8.0_1, libxslt-1.1.28, mDNSResponder-333.10, mpfr-3.1.2, nettle-2.6, p11-kit-0.16.3, pciids-20130327, pkgconf-0.9.1_2, png-1.5.14, renderproto-0.11.1, tiff-4.0.3, xextproto-7.2.0, xf86vidmodeproto-2.3.1, xproto-7.0.22
Also listed in: Gnustep

afni-2012.04.17.2129_3
Advanced Functional Neuro Imaging
Long description | Sources | Main Web Site
Maintained by: jwbacon@tds.net
Requires: R-2.15.3, bash-4.2.42, binutils-2.23.1, bitstream-vera-1.10_5, cairo-1.10.2_5,2, cups-client-1.5.4_1, cups-image-1.5.4_1, damageproto-1.2.1, dri2proto-2.6, encodings-1.0.4,1, endian-1.0, expat-2.0.1_2, fixesproto-5.0, font-bh-ttf-1.0.3, font-misc-ethiopic-1.0.3, font-misc-meltho-1.0.3, font-util-1.3.0, fontconfig-2.9.0,1, freetype2-2.4.11, gamin-0.1.10_5, gcc-4.6.3, gcc-ecj-4.5, gettext-0.18.1.1_1, ghostscript9-9.06_1, gio-fam-backend-2.34.3, glib-2.34.3, gmake-3.82_1, gmp-5.1.1, gnomehier-3.0, gobject-introspection-1.34.2, gsed-4.2.1_2, gsfonts-8.11_5, gsl-1.15_1, icu-50.1.2, inputproto-2.0.2, jasper-1.900.1_10, jbig2dec-0.11_1, jbigkit-1.6, jpeg-8_4, kbproto-1.0.5, lcms2-2.4, libGL-7.6.1_3, libGLU-7.6.1_2, libGLw-7.6.1_2, libICE-1.0.7,1, libSM-1.2.0,1, libX11-1.4.4,1, libXau-1.0.6, libXaw-1.0.9,2, libXdamage-1.1.3, libXdmcp-1.1.0, libXext-1.3.0_1,1, libXfixes-5.0, libXft-2.3.1, libXi-1.4.5,1, libXmu-1.1.0,1, libXp-1.0.1,1, libXpm-3.5.9, libXrender-0.9.6, libXt-1.1.1,1, libXxf86vm-1.1.1, libdrm-2.4.17_1, libffi-3.0.13, libfontenc-1.1.0, libiconv-1.14_1, libidn-1.26, libpaper-1.1.24_1, libpciaccess-0.12.1, libpthread-stubs-0.3_3, libxcb-1.7, libxml2-2.8.0_1, mkfontdir-1.0.7, mkfontscale-1.1.0, mpc-0.9, mpeg_encode-1.5b, mpfr-3.1.2, netpbm-10.35.88_1, open-motif-2.3.4, pango-1.30.1, pciids-20130327, pcre-8.32, perl-5.14.2_3, pixman-0.24.2, pkgconf-0.9.1_2, png-1.5.14, printproto-1.0.5, python27-2.7.3_6, renderproto-0.11.1, svgalib-1.4.3_6, tcl-8.5.13, tiff-4.0.3, tk-8.5.13, whirlgif-3.04, xbitmaps-1.1.1, xcb-util-0.3.9_1,1, xcb-util-renderutil-0.3.8, xextproto-7.2.0, xf86vidmodeproto-2.3.1, xorg-fonts-truetype-7.5.1, xproto-7.0.22
Also listed in: Science, Graphics

ariadne-1.3
Programs to compare protein sequences and profiles
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: gettext-0.18.1.1_1, gmake-3.82_1, libiconv-1.14_1

artemis-9_1
A DNA sequence viewer and annotation tool
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: dejavu-2.33, expat-2.0.1_2, fontconfig-2.9.0,1, freetype2-2.4.11, inputproto-2.0.2, java-zoneinfo-2013.b, javavmwrapper-2.4_3, jpeg-8_4, kbproto-1.0.5, libICE-1.0.7,1, libSM-1.2.0,1, libX11-1.4.4,1, libXau-1.0.6, libXaw-1.0.9,2, libXdmcp-1.1.0, libXext-1.3.0_1,1, libXft-2.3.1, libXi-1.4.5,1, libXmu-1.1.0,1, libXp-1.0.1,1, libXpm-3.5.9, libXrender-0.9.6, libXt-1.1.1,1, libXtst-1.2.0, libiconv-1.14_1, libpthread-stubs-0.3_3, libxcb-1.7, open-motif-2.3.4, openjdk6-b27_2, pkgconf-0.9.1_2, png-1.5.14, printproto-1.0.5, recordproto-1.14.1, renderproto-0.11.1, xbitmaps-1.1.1, xextproto-7.2.0, xproto-7.0.22
Also listed in: Java

avida-2.12.4
An auto-adaptive genetic system designed for ALife research
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: cmake-2.8.10.2, cmake-modules-2.8.10.2

babel-1.6_4
Converts among various molecular file formats
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Also listed in: Converters

biococoa-1.6.0_2
Bioinformatics framework
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: aspell-0.60.6.1_2, ca_root_nss-3.14.3, cups-client-1.5.4_1, damageproto-1.2.1, dri2proto-2.6, expat-2.0.1_2, fixesproto-5.0, flac-1.2.1_3, fontconfig-2.9.0,1, freetype2-2.4.11, gcc-4.2.5.20090325_5, gettext-0.18.1.1_1, giflib-4.2.1_1, gmake-3.82_1, gmp-5.1.1, gnustep-back-0.22.0, gnustep-base-1.24.0_1, gnustep-gui-0.22.0, gnustep-make-2.6.2, gnutls-2.12.23_1, jbigkit-1.6, jpeg-8_4, kbproto-1.0.5, libGL-7.6.1_3, libGLU-7.6.1_2, libICE-1.0.7,1, libSM-1.2.0,1, libX11-1.4.4,1, libXau-1.0.6, libXdamage-1.1.3, libXdmcp-1.1.0, libXext-1.3.0_1,1, libXfixes-5.0, libXft-2.3.1, libXmu-1.1.0,1, libXrender-0.9.6, libXt-1.1.1,1, libXxf86vm-1.1.1, libao-1.1.0_1, libdrm-2.4.17_1, libffi-3.0.13, libgcrypt-1.5.0_1, libgpg-error-1.11, libiconv-1.14_1, libogg-1.3.0,4, libpciaccess-0.12.1, libpthread-stubs-0.3_3, libsndfile-1.0.25_2, libtasn1-2.14, libvorbis-1.3.3_1,3, libxcb-1.7, libxml2-2.8.0_1, libxslt-1.1.28, mDNSResponder-333.10, mpfr-3.1.2, nettle-2.6, p11-kit-0.16.3, pciids-20130327, pkgconf-0.9.1_2, png-1.5.14, renderproto-0.11.1, tiff-4.0.3, xextproto-7.2.0, xf86vidmodeproto-2.3.1, xproto-7.0.22
Also listed in: Gnustep

biojava-1.7
Open-source Java tools for processing biological data
Long description | Sources | Main Web Site
Maintained by: wenheping@gmail.com
Requires: apache-ant-1.8.4, dejavu-2.33, expat-2.0.1_2, fontconfig-2.9.0,1, freetype2-2.4.11, inputproto-2.0.2, java-zoneinfo-2013.b, javavmwrapper-2.4_3, jpeg-8_4, kbproto-1.0.5, libICE-1.0.7,1, libSM-1.2.0,1, libX11-1.4.4,1, libXau-1.0.6, libXaw-1.0.9,2, libXdmcp-1.1.0, libXext-1.3.0_1,1, libXft-2.3.1, libXi-1.4.5,1, libXmu-1.1.0,1, libXp-1.0.1,1, libXpm-3.5.9, libXrender-0.9.6, libXt-1.1.1,1, libXtst-1.2.0, libiconv-1.14_1, libpthread-stubs-0.3_3, libxcb-1.7, open-motif-2.3.4, openjdk6-b27_2, pkgconf-0.9.1_2, png-1.5.14, printproto-1.0.5, recordproto-1.14.1, renderproto-0.11.1, xbitmaps-1.1.1, xextproto-7.2.0, xproto-7.0.22
Also listed in: Java

blat-34
A fast tool for local sequence similarity searches
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: gettext-0.18.1.1_1, gmake-3.82_1, libiconv-1.14_1

boinc-simap-5.10.5.09_5
Similarity Matrix of Proteins project for BOINC
Long description | Sources | Main Web Site
Maintained by: rene@FreeBSD.org
Requires: ORBit2-2.14.19, atk-2.6.0, bitstream-vera-1.10_5, boinc-client-7.0.28_2, ca_root_nss-3.14.3, cairo-1.10.2_5,2, compat6x-i386-6.4.604000.200810_3, compositeproto-0.4.2, cups-client-1.5.4_1, curl-7.24.0_2, damageproto-1.2.1, dbus-1.6.8, dbus-glib-0.100.1, dconf-0.12.1_1, dri2proto-2.6, encodings-1.0.4,1, expat-2.0.1_2, fixesproto-5.0, font-bh-ttf-1.0.3, font-misc-ethiopic-1.0.3, font-misc-meltho-1.0.3, font-util-1.3.0, fontconfig-2.9.0,1, freeglut-2.8.0, freetype2-2.4.11, gamin-0.1.10_5, gconf2-2.32.0_3, gdk-pixbuf2-2.26.5_3, gettext-0.18.1.1_1, gio-fam-backend-2.34.3, glib-2.34.3, gnome_subr-1.0, gnomehier-3.0, gobject-introspection-1.34.2, gstreamer-0.10.36, gstreamer-plugins-0.10.36_3,3, gtk-2.24.17, gtk-update-icon-cache-2.24.17, hicolor-icon-theme-0.12, inputproto-2.0.2, jasper-1.900.1_10, jbigkit-1.6, jpeg-8_4, kbproto-1.0.5, libGL-7.6.1_3, libGLU-7.6.1_2, libICE-1.0.7,1, libIDL-0.8.14_1, libSM-1.2.0,1, libX11-1.4.4,1, libXau-1.0.6, libXcomposite-0.4.3,1, libXcursor-1.1.12, libXdamage-1.1.3, libXdmcp-1.1.0, libXext-1.3.0_1,1, libXfixes-5.0, libXft-2.3.1, libXi-1.4.5,1, libXinerama-1.1.1,1, libXmu-1.1.0,1, libXrandr-1.3.2, libXrender-0.9.6, libXt-1.1.1,1, libXv-1.0.6,1, libXxf86vm-1.1.1, libdrm-2.4.17_1, libffi-3.0.13, libfontenc-1.1.0, libiconv-1.14_1, libmspack-0.3, libnotify-0.7.3_2, libpciaccess-0.12.1, libpthread-stubs-0.3_3, libxcb-1.7, libxml2-2.8.0_1, mkfontdir-1.0.7, mkfontscale-1.1.0, orc-0.4.16_1, pango-1.30.1, pciids-20130327, pcre-8.32, perl-5.14.2_3, pixman-0.24.2, pkgconf-0.9.1_2, png-1.5.14, polkit-0.105_1, python27-2.7.3_6, randrproto-1.3.2, renderproto-0.11.1, shared-mime-info-1.0_2, sqlite3-3.7.14.1, tiff-4.0.3, videoproto-2.3.1, wxgtk2-2.8.12_1, wxgtk2-common-2.8.12_1, xcb-util-0.3.9_1,1, xcb-util-renderutil-0.3.8, xextproto-7.2.0, xf86vidmodeproto-2.3.1, xineramaproto-1.2.1, xorg-fonts-truetype-7.5.1, xproto-7.0.22

chemeq-1.50_1
Outputs LaTeX code for chemical reaction
Long description | Sources
Maintained by: ports@FreeBSD.org
Requires: bison-2.7,1, gettext-0.18.1.1_1, libiconv-1.14_1, m4-1.4.16_1,1
Also listed in: Textproc

clustalw-2.1_1
A multiple alignment program for DNA or proteins
Long description | Sources | Main Web Site
Maintained by: wen@FreeBSD.org

consed-16.0
A graphical tool for editing Phrap assemblies
Long description | Sources | Main Web Site
Maintained by: mzaki@biol.s.u-tokyo.ac.jp
Requires: linux-f10-expat-2.0.1, linux-f10-fontconfig-2.6.0, linux-f10-xorg-libs-7.4_1, linux_base-f10-10_5, perl-5.14.2_3, phd2fasta-0.990622.f, phrap-0.990329, phred-0.020425.c

crux-1.2.0_1
Software toolkit for phylogenetic inference
Long description | Sources | Main Web Site
Maintained by: jasone@FreeBSD.org
Requires: binutils-2.23.1, gcc-4.6.3, gcc-ecj-4.5, gettext-0.18.1.1_1, gmake-3.82_1, gmp-5.1.1, libiconv-1.14_1, mpc-0.9, mpfr-3.1.2, python27-2.7.3_6
Also listed in: Python

cycle-0.3.1_5
A calendar program for women
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: ORBit2-2.14.19, atk-2.6.0, binutils-2.23.1, bitstream-vera-1.10_5, blas-3.4.2, cairo-1.10.2_5,2, compositeproto-0.4.2, cups-client-1.5.4_1, damageproto-1.2.1, dbus-1.6.8, dbus-glib-0.100.1, dconf-0.12.1_1, dri2proto-2.6, encodings-1.0.4,1, expat-2.0.1_2, fixesproto-5.0, font-bh-ttf-1.0.3, font-misc-ethiopic-1.0.3, font-misc-meltho-1.0.3, font-util-1.3.0, fontconfig-2.9.0,1, freeglut-2.8.0, freetype2-2.4.11, gamin-0.1.10_5, gcc-4.6.3, gcc-ecj-4.5, gconf2-2.32.0_3, gdk-pixbuf2-2.26.5_3, gettext-0.18.1.1_1, gio-fam-backend-2.34.3, glib-2.34.3, gmp-5.1.1, gnome_subr-1.0, gnomehier-3.0, gobject-introspection-1.34.2, gstreamer-0.10.36, gstreamer-plugins-0.10.36_3,3, gtk-2.24.17, gtk-update-icon-cache-2.24.17, hicolor-icon-theme-0.12, inputproto-2.0.2, jasper-1.900.1_10, jbigkit-1.6, jpeg-8_4, kbproto-1.0.5, lapack-3.4.2, lcms-1.19_1,1, libGL-7.6.1_3, libGLU-7.6.1_2, libICE-1.0.7,1, libIDL-0.8.14_1, libSM-1.2.0,1, libX11-1.4.4,1, libXau-1.0.6, libXcomposite-0.4.3,1, libXcursor-1.1.12, libXdamage-1.1.3, libXdmcp-1.1.0, libXext-1.3.0_1,1, libXfixes-5.0, libXft-2.3.1, libXi-1.4.5,1, libXinerama-1.1.1,1, libXrandr-1.3.2, libXrender-0.9.6, libXt-1.1.1,1, libXv-1.0.6,1, libXxf86vm-1.1.1, libdrm-2.4.17_1, libffi-3.0.13, libfontenc-1.1.0, libiconv-1.14_1, libmspack-0.3, libpciaccess-0.12.1, libpthread-stubs-0.3_3, libxcb-1.7, libxml2-2.8.0_1, mkfontdir-1.0.7, mkfontscale-1.1.0, mpc-0.9, mpfr-3.1.2, orc-0.4.16_1, pango-1.30.1, pciids-20130327, pcre-8.32, perl-5.14.2_3, pixman-0.24.2, pkgconf-0.9.1_2, png-1.5.14, polkit-0.105_1, py27-distribute-0.6.35, py27-imaging-1.1.7_2, py27-nose-1.2.1, py27-numpy-1.6.2_1,1, py27-opengl-3.0.1_2, py27-tkinter-2.7.3_4, py27-wxPython-2.8.12.1_1, py27-wxPython-common-2.8.12.1_1, python27-2.7.3_6, randrproto-1.3.2, renderproto-0.11.1, shared-mime-info-1.0_2, suitesparse-4.0.2_1, tcl-8.5.13, tiff-4.0.3, tk-8.5.13, videoproto-2.3.1, wxgtk2-2.8.12_1, wxgtk2-common-2.8.12_1, wxgtk2-contrib-2.8.12_1, wxgtk2-contrib-common-2.8.12_1, xcb-util-0.3.9_1,1, xcb-util-renderutil-0.3.8, xextproto-7.2.0, xf86vidmodeproto-2.3.1, xineramaproto-1.2.1, xorg-fonts-truetype-7.5.1, xproto-7.0.22
Also listed in: Deskutils, Python

dotter-20021204
A viewer for multiple sequence alignments
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: linux_base-f10-10_5

dtiquery-1.1_5
Stanford DTI Visualization tool
Long description | Sources | Main Web Site
Maintained by: jwbacon@tds.net
Requires: ORBit2-2.14.19, atk-2.6.0, bitstream-vera-1.10_5, ca_root_nss-3.14.3, cairo-1.10.2_5,2, compositeproto-0.4.2, cups-client-1.5.4_1, damageproto-1.2.1, dbus-1.6.8, dbus-glib-0.100.1, dconf-0.12.1_1, dri2proto-2.6, encodings-1.0.4,1, expat-2.0.1_2, fixesproto-5.0, font-bh-ttf-1.0.3, font-misc-ethiopic-1.0.3, font-misc-meltho-1.0.3, font-util-1.3.0, fontcacheproto-0.1.3, fontconfig-2.9.0,1, freetype2-2.4.11, gamin-0.1.10_5, gconf2-2.32.0_3, gdk-pixbuf2-2.26.5_3, gettext-0.18.1.1_1, gio-fam-backend-2.34.3, gl2ps-1.3.7, glib-2.34.3, gmake-3.82_1, gnome_subr-1.0, gnomehier-3.0, gobject-introspection-1.34.2, gstreamer-0.10.36, gstreamer-plugins-0.10.36_3,3, gtk-2.24.17, gtk-update-icon-cache-2.24.17, hicolor-icon-theme-0.12, icu-50.1.2, inputproto-2.0.2, jama-1.2.5, jasper-1.900.1_10, jbigkit-1.6, jpeg-8_4, kbproto-1.0.5, kdehier4-1.0.11, libGL-7.6.1_3, libGLU-7.6.1_2, libICE-1.0.7,1, libIDL-0.8.14_1, libSM-1.2.0,1, libX11-1.4.4,1, libXau-1.0.6, libXcomposite-0.4.3,1, libXcursor-1.1.12, libXdamage-1.1.3, libXdmcp-1.1.0, libXext-1.3.0_1,1, libXfixes-5.0, libXfontcache-1.0.5, libXft-2.3.1, libXi-1.4.5,1, libXinerama-1.1.1,1, libXmu-1.1.0,1, libXrandr-1.3.2, libXrender-0.9.6, libXt-1.1.1,1, libXv-1.0.6,1, libXxf86vm-1.1.1, libdrm-2.4.17_1, libffi-3.0.13, libfontenc-1.1.0, libiconv-1.14_1, libmspack-0.3, libpciaccess-0.12.1, libpthread-stubs-0.3_3, libxcb-1.7, libxml2-2.8.0_1, mkfontdir-1.0.7, mkfontscale-1.1.0, orc-0.4.16_1, pango-1.30.1, pciids-20130327, pcre-8.32, perl-5.14.2_3, phonon-4.6.0_1, pixman-0.24.2, pkgconf-0.9.1_2, png-1.5.14, polkit-0.105_1, python27-2.7.3_6, qt4-assistant-4.8.4, qt4-clucene-4.8.4, qt4-corelib-4.8.4_1, qt4-dbus-4.8.4, qt4-declarative-4.8.4, qt4-designer-4.8.4, qt4-doc-4.8.4, qt4-gui-4.8.4, qt4-help-4.8.4, qt4-network-4.8.4, qt4-opengl-4.8.4, qt4-qt3support-4.8.4, qt4-qtestlib-4.8.4, qt4-script-4.8.4, qt4-sql-4.8.4, qt4-sqlite-plugin-4.8.4, qt4-svg-4.8.4, qt4-webkit-4.8.4_1, qt4-xml-4.8.4, qt4-xmlpatterns-4.8.4, qzeitgeist-0.8.0, randrproto-1.3.2, rapid-2.01, renderproto-0.11.1, shared-mime-info-1.0_2, sqlite3-3.7.14.1, tcl-8.5.13, tiff-4.0.3, tk-8.5.13, tnt-1.2.6, videoproto-2.3.1, vtk-5.10.1, wxgtk2-2.8.12_1, wxgtk2-common-2.8.12_1, xcb-util-0.3.9_1,1, xcb-util-renderutil-0.3.8, xdg-utils-1.0.2_8, xextproto-7.2.0, xf86vidmodeproto-2.3.1, xineramaproto-1.2.1, xorg-fonts-truetype-7.5.1, xprop-1.2.1, xproto-7.0.22, xset-1.2.2_1
Also listed in: Science

embassy-6.2.0_2
Collection of contributed EMBOSS applications
Long description | Sources | Main Web Site
Maintained by: wen@FreeBSD.org
Requires: emboss-6.2.0_2, expat-2.0.1_2, fontconfig-2.9.0,1, freetype2-2.4.11, gd-2.0.35_8,1, gettext-0.18.1.1_1, gmake-3.82_1, jpeg-8_4, kbproto-1.0.5, libICE-1.0.7,1, libSM-1.2.0,1, libX11-1.4.4,1, libXau-1.0.6, libXaw-1.0.9,2, libXdmcp-1.1.0, libXext-1.3.0_1,1, libXft-2.3.1, libXmu-1.1.0,1, libXp-1.0.1,1, libXpm-3.5.9, libXrender-0.9.6, libXt-1.1.1,1, libiconv-1.14_1, libpthread-stubs-0.3_3, libxcb-1.7, open-motif-2.3.4, pkgconf-0.9.1_2, png-1.5.14, printproto-1.0.5, renderproto-0.11.1, xbitmaps-1.1.1, xextproto-7.2.0, xproto-7.0.22

emboss-6.2.0_2
A collection of open source tools for genetic sequence analysis
Long description | Sources | Main Web Site
Maintained by: wen@FreeBSD.org
Requires: clustalw-2.1_1, expat-2.0.1_2, fontconfig-2.9.0,1, freetype2-2.4.11, gd-2.0.35_8,1, gettext-0.18.1.1_1, gmake-3.82_1, jpeg-8_4, kbproto-1.0.5, libICE-1.0.7,1, libSM-1.2.0,1, libX11-1.4.4,1, libXau-1.0.6, libXaw-1.0.9,2, libXdmcp-1.1.0, libXext-1.3.0_1,1, libXft-2.3.1, libXmu-1.1.0,1, libXp-1.0.1,1, libXpm-3.5.9, libXrender-0.9.6, libXt-1.1.1,1, libiconv-1.14_1, libpthread-stubs-0.3_3, libtool-2.4.2, libxcb-1.7, open-motif-2.3.4, pkgconf-0.9.1_2, png-1.5.14, primer3-1.1.4, printproto-1.0.5, renderproto-0.11.1, xbitmaps-1.1.1, xextproto-7.2.0, xproto-7.0.22

fasta-21.1.1
A collection of programs for searching DNA and protein databases
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org

fasta3-36.3.2
A collection of programs for searching DNA and protein databases
Long description | Sources | Main Web Site
Maintained by: wen@FreeBSD.org

fastdnaml-1.2.2_2
Faster DNAML, makes phylogenetic trees using maximum likelihood
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org

finchtv-1.3.1
A chromatogram trace viewer
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: linux_base-f10-10_5

fluctuate-1.40
A program to fit population models
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org

garlic-1.6
Molecular viewer, editor, and visualization program
Long description | Sources | Main Web Site
Maintained by: maho@FreeBSD.org
Requires: gettext-0.18.1.1_1, gmake-3.82_1, kbproto-1.0.5, libX11-1.4.4,1, libXau-1.0.6, libXdmcp-1.1.0, libiconv-1.14_1, libpthread-stubs-0.3_3, libxcb-1.7, pkgconf-0.9.1_2, xproto-7.0.22

genpak-0.26_8
A set of small utilities to manipulate DNA sequences
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: expat-2.0.1_2, fontconfig-2.9.0,1, freetype2-2.4.11, gd-2.0.35_8,1, gettext-0.18.1.1_1, gmake-3.82_1, jpeg-8_4, libiconv-1.14_1, png-1.5.14

gff2ps-0.98d_2
Converts gff-formated genomic data-sets to PostScript
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: bash-4.2.42, gawk-4.0.2, gettext-0.18.1.1_1, libiconv-1.14_1, libsigsegv-2.10

gmap-2006.04.21
A Genomic Mapping and Alignment Program for mRNA and EST Sequences
Long description | Sources | Main Web Site
Maintained by: rpz@cse.wustl.edu
Requires: gettext-0.18.1.1_1, gmake-3.82_1, libiconv-1.14_1

gperiodic-2.0.10_7
Displays a periodic table of the elements
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: atk-2.6.0, bitstream-vera-1.10_5, cairo-1.10.2_5,2, compositeproto-0.4.2, cups-client-1.5.4_1, damageproto-1.2.1, encodings-1.0.4,1, expat-2.0.1_2, fixesproto-5.0, font-bh-ttf-1.0.3, font-misc-ethiopic-1.0.3, font-misc-meltho-1.0.3, font-util-1.3.0, fontconfig-2.9.0,1, freetype2-2.4.11, gamin-0.1.10_5, gdk-pixbuf2-2.26.5_3, gettext-0.18.1.1_1, gio-fam-backend-2.34.3, glib-2.34.3, gnomehier-3.0, gobject-introspection-1.34.2, gtk-2.24.17, gtk-update-icon-cache-2.24.17, hicolor-icon-theme-0.12, inputproto-2.0.2, intltool-0.41.1, jasper-1.900.1_10, jbigkit-1.6, jpeg-8_4, kbproto-1.0.5, libICE-1.0.7,1, libSM-1.2.0,1, libX11-1.4.4,1, libXau-1.0.6, libXcomposite-0.4.3,1, libXcursor-1.1.12, libXdamage-1.1.3, libXdmcp-1.1.0, libXext-1.3.0_1,1, libXfixes-5.0, libXft-2.3.1, libXi-1.4.5,1, libXinerama-1.1.1,1, libXrandr-1.3.2, libXrender-0.9.6, libXt-1.1.1,1, libffi-3.0.13, libfontenc-1.1.0, libiconv-1.14_1, libpthread-stubs-0.3_3, libxcb-1.7, libxml2-2.8.0_1, mkfontdir-1.0.7, mkfontscale-1.1.0, p5-XML-Parser-2.41_1, pango-1.30.1, pcre-8.32, perl-5.14.2_3, pixman-0.24.2, pkgconf-0.9.1_2, png-1.5.14, python27-2.7.3_6, randrproto-1.3.2, renderproto-0.11.1, shared-mime-info-1.0_2, tiff-4.0.3, xcb-util-0.3.9_1,1, xcb-util-renderutil-0.3.8, xextproto-7.2.0, xineramaproto-1.2.1, xorg-fonts-truetype-7.5.1, xproto-7.0.22

grappa-2.0
Genome Rearrangements Analysis and Phylogeny Software
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: gettext-0.18.1.1_1, gmake-3.82_1, libiconv-1.14_1

hmmer-2.3.2
Profile hidden Markov models for biological sequence analysis
Long description | Sources | Main Web Site
Maintained by: wen@FreeBSD.org
Requires: perl-5.14.2_3

io_lib-1.12.5
A general purpose trace file(and Experiment File) reading interface
Long description | Sources | Main Web Site
Maintained by: culot@FreeBSD.org
Requires: ca_root_nss-3.14.3, curl-7.24.0_2, gettext-0.18.1.1_1, gmake-3.82_1, libiconv-1.14_1, libtool-2.4.2

jalview-2.07_2
A viewer and editor for multiple sequence alignments
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: apache-ant-1.8.4, dejavu-2.33, expat-2.0.1_2, fontconfig-2.9.0,1, freetype2-2.4.11, inputproto-2.0.2, java-zoneinfo-2013.b, javavmwrapper-2.4_3, jpeg-8_4, kbproto-1.0.5, libICE-1.0.7,1, libSM-1.2.0,1, libX11-1.4.4,1, libXau-1.0.6, libXaw-1.0.9,2, libXdmcp-1.1.0, libXext-1.3.0_1,1, libXft-2.3.1, libXi-1.4.5,1, libXmu-1.1.0,1, libXp-1.0.1,1, libXpm-3.5.9, libXrender-0.9.6, libXt-1.1.1,1, libXtst-1.2.0, libiconv-1.14_1, libpthread-stubs-0.3_3, libxcb-1.7, open-motif-2.3.4, openjdk6-b27_2, pkgconf-0.9.1_2, png-1.5.14, printproto-1.0.5, recordproto-1.14.1, renderproto-0.11.1, xbitmaps-1.1.1, xextproto-7.2.0, xproto-7.0.22
Also listed in: Java

lagan-2.0
Efficient tools for large-scale multiple alignments of genomic DNA
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: perl-5.14.2_3

lamarc-2.1.8
A package of programs for computing population parameters
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org

libgenome-0.5.2_1
Toolkit for developing bioinformatic related software in C++
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: libtool-2.4.2

libsbml-4.2.0
API Library for Working with SBML File
Long description | Sources | Main Web Site
Maintained by: wen@FreeBSD.org
Requires: gettext-0.18.1.1_1, gmake-3.82_1, libiconv-1.14_1, libxml2-2.8.0_1, pkgconf-0.9.1_2
Also listed in: Devel

linux-foldingathome-5.04
Distributed client for Protein Folding
Long description | Sources | Main Web Site
Maintained by: onatan@gmail.com
Requires: linux_base-f10-10_5

mafft-6.903
Multiple alignment program for amino acid or nucleotide sequences
Long description | Sources | Main Web Site
Maintained by: cartwright@asu.edu
Requires: fasta3-36.3.2, gettext-0.18.1.1_1, gmake-3.82_1, libiconv-1.14_1

mapm3-3.0
Constructs linkage maps of markers segregating in experimental crosses
Long description | Sources | Main Web Site
Maintained by: tphilipp@potion-studios.com

migrate-3.1.6
A program to estimate population sizes and migration rates
Long description | Sources | Main Web Site
Maintained by: wen@FreeBSD.org

minc-1.5.1
Medical Imaging NetCDF
Long description | Sources | Main Web Site
Maintained by: jwbacon@tds.net
Requires: libtool-2.4.2, netcdf-3.6.3_4
Also listed in: Science

minc-2.0.18
Medical Imaging NetCDF
Long description | Sources | Main Web Site
Maintained by: jwbacon@tds.net
Requires: hdf5-1.6.9_1, libtool-2.4.2, netcdf-3.6.3_4
Also listed in: Science

molden-5.0.4
Display molecular orbitals and electron densities in 2D and 3D
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: binutils-2.23.1, damageproto-1.2.1, dri2proto-2.6, expat-2.0.1_2, fixesproto-5.0, gcc-4.6.3, gcc-ecj-4.5, gettext-0.18.1.1_1, gmake-3.82_1, gmp-5.1.1, kbproto-1.0.5, libGL-7.6.1_3, libGLU-7.6.1_2, libX11-1.4.4,1, libXau-1.0.6, libXdamage-1.1.3, libXdmcp-1.1.0, libXext-1.3.0_1,1, libXfixes-5.0, libXxf86vm-1.1.1, libdrm-2.4.17_1, libiconv-1.14_1, libpciaccess-0.12.1, libpthread-stubs-0.3_3, libxcb-1.7, mpc-0.9, mpfr-3.1.2, pciids-20130327, pkgconf-0.9.1_2, xextproto-7.2.0, xf86vidmodeproto-2.3.1, xproto-7.0.22

mopac-7.1.11_1
Semi-empirical (MNDO, etc.) molecular orbital calculation
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: autoconf-2.69, autoconf-wrapper-20101119, automake-1.12.6, automake-wrapper-20101119, f2c-20060810_3, gettext-0.18.1.1_1, gmake-3.82_1, libiconv-1.14_1, libtool-2.4.2, m4-1.4.16_1,1, perl-5.14.2_3

mrbayes-3.1.2_1
Bayesian inference of phylogeny
Long description | Sources | Main Web Site
Maintained by: mzaki@m.u-tokyo.ac.jp
Requires: gettext-0.18.1.1_1, gmake-3.82_1, libiconv-1.14_1, readline-6.2_1

mummer-3.23
A modular system for rapid whole genome alignment
Long description | Sources | Main Web Site
Maintained by: sylvio@FreeBSD.org
Requires: gettext-0.18.1.1_1, gmake-3.82_1, libiconv-1.14_1

muscle-3.6
Multiple Sequence Comparison by Log-Expectation
Long description | Sources | Main Web Site
Maintained by: mzaki@m.u-tokyo.ac.jp
Requires: gettext-0.18.1.1_1, gmake-3.82_1, libiconv-1.14_1

ncbi-toolkit-2012.06.20
NCBI development toolkit, including BLAST 2 and GenBank/Entrez support
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: expat-2.0.1_2, fontconfig-2.9.0,1, freetype2-2.4.11, jpeg-8_4, kbproto-1.0.5, libICE-1.0.7,1, libSM-1.2.0,1, libX11-1.4.4,1, libXau-1.0.6, libXaw-1.0.9,2, libXdmcp-1.1.0, libXext-1.3.0_1,1, libXft-2.3.1, libXmu-1.1.0,1, libXp-1.0.1,1, libXpm-3.5.9, libXrender-0.9.6, libXt-1.1.1,1, libiconv-1.14_1, libpthread-stubs-0.3_3, libxcb-1.7, open-motif-2.3.4, pkgconf-0.9.1_2, png-1.5.14, printproto-1.0.5, renderproto-0.11.1, xbitmaps-1.1.1, xextproto-7.2.0, xproto-7.0.22

njplot-2.1_2
Phylogenetic tree drawing program capable of interactive manipulation
Long description | Sources | Main Web Site
Maintained by: mzaki@m.u-tokyo.ac.jp
Requires: expat-2.0.1_2, fontconfig-2.9.0,1, freetype2-2.4.11, jpeg-8_4, kbproto-1.0.5, libICE-1.0.7,1, libSM-1.2.0,1, libX11-1.4.4,1, libXau-1.0.6, libXaw-1.0.9,2, libXdmcp-1.1.0, libXext-1.3.0_1,1, libXft-2.3.1, libXmu-1.1.0,1, libXp-1.0.1,1, libXpm-3.5.9, libXrender-0.9.6, libXt-1.1.1,1, libiconv-1.14_1, libpthread-stubs-0.3_3, libxcb-1.7, ncbi-toolkit-2012.06.20, open-motif-2.3.4, pkgconf-0.9.1_2, png-1.5.14, printproto-1.0.5, renderproto-0.11.1, xbitmaps-1.1.1, xextproto-7.2.0, xproto-7.0.22

ortep3-1.0.3_5
The Oak Ridge Thermal Ellipsoid Plot Program for Crystal Structure
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: binutils-2.23.1, gcc-4.6.3, gcc-ecj-4.5, gettext-0.18.1.1_1, gmp-5.1.1, libiconv-1.14_1, mpc-0.9, mpfr-3.1.2

p5-AcePerl-1.92_2
Perl5 interface to the ACEDB genome database system
Long description | Sources | Main Web Site
Maintained by: perl@FreeBSD.org
Requires: p5-Cache-2.04_1, p5-Cache-Cache-1.06, p5-Digest-SHA1-2.13, p5-Error-0.17019, p5-File-NFSLock-1.21, p5-Heap-0.80, p5-IO-String-1.08, p5-IPC-ShareLite-0.17, p5-TimeDate-2.30_1,1, perl-5.14.2_3
Also listed in: Databases, Perl5

p5-Bio-ASN1-EntrezGene-1.091
Regular expression-based Perl Parser for NCBI Entrez Gene
Long description | Sources | Main Web Site
Maintained by: mauricio@arareko.net
Requires: perl-5.14.2_3
Also listed in: Perl5

p5-Bio-Das-1.17_2
Client-side library for Distributed Genome Annotation System
Long description | Sources | Main Web Site
Maintained by: perl@FreeBSD.org
Requires: bitstream-vera-1.10_5, cairo-1.10.2_5,2, encodings-1.0.4,1, expat-2.0.1_2, font-bh-ttf-1.0.3, font-misc-ethiopic-1.0.3, font-misc-meltho-1.0.3, font-util-1.3.0, fontconfig-2.9.0,1, freetype2-2.4.11, gamin-0.1.10_5, gd-2.0.35_8,1, gettext-0.18.1.1_1, gio-fam-backend-2.34.3, glib-2.34.3, gnomehier-3.0, gobject-introspection-1.34.2, graphviz-2.30.1, jpeg-8_4, kbproto-1.0.5, libICE-1.0.7,1, libSM-1.2.0,1, libX11-1.4.4,1, libXau-1.0.6, libXaw-1.0.9,2, libXdmcp-1.1.0, libXext-1.3.0_1,1, libXft-2.3.1, libXmu-1.1.0,1, libXp-1.0.1,1, libXpm-3.5.9, libXrender-0.9.6, libXt-1.1.1,1, libffi-3.0.13, libfontenc-1.1.0, libiconv-1.14_1, libltdl-2.4.2, libpthread-stubs-0.3_3, libxcb-1.7, mkfontdir-1.0.7, mkfontscale-1.1.0, mysql-client-5.5.30, p5-AcePerl-1.92_2, p5-Algorithm-C3-0.08, p5-Algorithm-Munkres-0.08, p5-Array-Compare-2.02, p5-Authen-NTLM-1.09, p5-Bio-ASN1-EntrezGene-1.091, p5-Cache-2.04_1, p5-Cache-Cache-1.06, p5-Class-AutoClass-1.01, p5-Class-C3-0.24, p5-Class-Inspector-1.28, p5-Class-Load-0.20, p5-Class-Load-XS-0.06, p5-Clone-0.34, p5-Convert-BinHex-1.119, p5-Convert-Binary-C-0.76, p5-Crypt-RC4-2.02, p5-Crypt-SSLeay-0.64, p5-DBD-mysql-4.021, p5-DBI-1.625, p5-Data-OptList-0.107, p5-Data-Stag-0.11, p5-Devel-GlobalDestruction-0.10, p5-Digest-HMAC-1.03, p5-Digest-Perl-MD5-1.8, p5-Digest-SHA1-2.13, p5-Dist-CheckConflicts-0.02, p5-Email-Date-Format-1.002, p5-Encode-Locale-1.03, p5-Error-0.17019, p5-Eval-Closure-0.08, p5-File-Listing-6.04, p5-File-NFSLock-1.21, p5-GD-2.49, p5-GD-SVG-0.33_4, p5-Graph-0.94,1, p5-GraphViz-2.14, p5-HTML-Parser-3.69, p5-HTML-Tagset-3.20, p5-HTML-Tree-5.03, p5-HTTP-Cookies-6.01, p5-HTTP-Daemon-6.01, p5-HTTP-Date-6.02, p5-HTTP-Message-6.06_1, p5-HTTP-Negotiate-6.01, p5-Heap-0.80, p5-IO-HTML-1.00, p5-IO-Socket-IP-0.19, p5-IO-Socket-SSL-1.84, p5-IO-String-1.08, p5-IO-Tty-1.10, p5-IO-stringy-2.110, p5-IPC-Run-0.92, p5-IPC-ShareLite-0.17, p5-LWP-MediaTypes-6.02, p5-LWP-Protocol-https-6.03, p5-List-MoreUtils-0.33, p5-MIME-Lite-3.02.9, p5-MIME-Tools-5.504,2, p5-MIME-Types-1.38, p5-MRO-Compat-0.12, p5-Mail-Tools-2.12, p5-Math-Derivative-0.01, p5-Math-Random-0.71, p5-Math-Spline-0.01, p5-Module-Implementation-0.06, p5-Module-Runtime-0.013, p5-Moose-2.0801, p5-Mozilla-CA-20130114, p5-Net-HTTP-6.06, p5-Net-SSLeay-1.54, p5-OLE-Storage_Lite-0.19, p5-Package-DeprecationManager-0.13, p5-Package-Stash-0.34, p5-Package-Stash-XS-0.26, p5-Params-Util-1.07, p5-Parse-RecDescent-1.967.009_1, p5-PostScript-0.06, p5-SOAP-Lite-0.715, p5-SVG-2.54, p5-SVG-Graph-0.04, p5-Scalar-List-Utils-1.27,1, p5-Set-Scalar-1.25, p5-Socket-2.009, p5-Spreadsheet-ParseExcel-0.59,1, p5-Statistics-Descriptive-3.0604, p5-Sub-Exporter-0.985, p5-Sub-Exporter-Progressive-0.001.006, p5-Sub-Install-0.926, p5-Sub-Name-0.05, p5-Task-Weaken-1.04, p5-Text-Iconv-1.7, p5-Text-Shellwords-1.08, p5-Tie-IxHash-1.23, p5-TimeDate-2.30_1,1, p5-Tree-DAG_Node-1.06, p5-Try-Tiny-0.12, p5-URI-1.60, p5-WWW-RobotRules-6.02, p5-XML-DOM-1.44, p5-XML-DOM-XPath-0.14, p5-XML-Filter-BufferText-1.01, p5-XML-NamespaceSupport-1.11, p5-XML-Parser-2.41_1, p5-XML-RegExp-0.04, p5-XML-SAX-0.99, p5-XML-SAX-Base-1.08, p5-XML-SAX-Writer-0.53, p5-XML-Twig-3.42, p5-XML-Writer-0.615, p5-XML-XPath-1.13, p5-XML-XPathEngine-0.13, p5-bioperl-1.6.1_4, p5-libwww-6.05, p5-libxml-0.08, pango-1.30.1, pcre-8.32, perl-5.14.2_3, pixman-0.24.2, pkgconf-0.9.1_2, png-1.5.14, printproto-1.0.5, python27-2.7.3_6, renderproto-0.11.1, xcb-util-0.3.9_1,1, xcb-util-renderutil-0.3.8, xextproto-7.2.0, xorg-fonts-truetype-7.5.1, xproto-7.0.22
Also listed in: Perl5

p5-Bio-Das-Lite-2.11
Perl extension for the DAS (HTTP+XML) Protocol
Long description | Sources | Main Web Site
Maintained by: perl@FreeBSD.org
Requires: ca_root_nss-3.14.3, curl-7.24.0_2, p5-Authen-NTLM-1.09, p5-Digest-HMAC-1.03, p5-Encode-Locale-1.03, p5-File-Listing-6.04, p5-HTML-Parser-3.69, p5-HTML-Tagset-3.20, p5-HTTP-Cookies-6.01, p5-HTTP-Daemon-6.01, p5-HTTP-Date-6.02, p5-HTTP-Message-6.06_1, p5-HTTP-Negotiate-6.01, p5-IO-HTML-1.00, p5-IO-Socket-IP-0.19, p5-IO-Socket-SSL-1.84, p5-LWP-MediaTypes-6.02, p5-Module-Build-0.4004, p5-Net-HTTP-6.06, p5-Net-SSLeay-1.54, p5-Readonly-1.03_2, p5-Socket-2.009, p5-URI-1.60, p5-WWW-Curl-4.15, p5-WWW-RobotRules-6.02, p5-libwww-6.05, perl-5.14.2_3
Also listed in: Perl5

p5-Bio-GFF3-1.5
Fast low-level functions for parsing and formatting GFF3
Long description | Sources | Main Web Site
Maintained by: perl@FreeBSD.org
Requires: p5-List-MoreUtils-0.33, p5-URI-1.60, perl-5.14.2_3
Also listed in: Perl5

p5-Bio-Glite-0.10_1
Perl Interface to G-language
Long description | Sources | Main Web Site
Maintained by: perl@FreeBSD.org
Requires: p5-Authen-NTLM-1.09, p5-Digest-HMAC-1.03, p5-Encode-Locale-1.03, p5-File-Listing-6.04, p5-HTML-Parser-3.69, p5-HTML-Tagset-3.20, p5-HTTP-Cookies-6.01, p5-HTTP-Daemon-6.01, p5-HTTP-Date-6.02, p5-HTTP-Message-6.06_1, p5-HTTP-Negotiate-6.01, p5-IO-HTML-1.00, p5-IO-Socket-IP-0.19, p5-IO-Socket-SSL-1.84, p5-LWP-MediaTypes-6.02, p5-Net-HTTP-6.06, p5-Net-SSLeay-1.54, p5-Socket-2.009, p5-URI-1.60, p5-WWW-RobotRules-6.02, p5-libwww-6.05, perl-5.14.2_3
Also listed in: Perl5

p5-Bio-Graphics-2.33
Generate GD Images of Bio::Seq Objects
Long description | Sources | Main Web Site
Maintained by: perl@FreeBSD.org
Requires: bitstream-vera-1.10_5, ca_root_nss-3.14.3, cairo-1.10.2_5,2, curl-7.24.0_2, encodings-1.0.4,1, expat-2.0.1_2, font-bh-ttf-1.0.3, font-misc-ethiopic-1.0.3, font-misc-meltho-1.0.3, font-util-1.3.0, fontconfig-2.9.0,1, freetype2-2.4.11, gamin-0.1.10_5, gd-2.0.35_8,1, gettext-0.18.1.1_1, gio-fam-backend-2.34.3, glib-2.34.3, gnomehier-3.0, gobject-introspection-1.34.2, graphviz-2.30.1, io_lib-1.12.5, jpeg-8_4, kbproto-1.0.5, libICE-1.0.7,1, libSM-1.2.0,1, libX11-1.4.4,1, libXau-1.0.6, libXaw-1.0.9,2, libXdmcp-1.1.0, libXext-1.3.0_1,1, libXft-2.3.1, libXmu-1.1.0,1, libXp-1.0.1,1, libXpm-3.5.9, libXrender-0.9.6, libXt-1.1.1,1, libffi-3.0.13, libfontenc-1.1.0, libiconv-1.14_1, libltdl-2.4.2, libpthread-stubs-0.3_3, libxcb-1.7, mkfontdir-1.0.7, mkfontscale-1.1.0, mysql-client-5.5.30, p5-AcePerl-1.92_2, p5-Algorithm-C3-0.08, p5-Algorithm-Munkres-0.08, p5-Array-Compare-2.02, p5-Authen-NTLM-1.09, p5-Bio-ASN1-EntrezGene-1.091, p5-Bio-SCF-1.03, p5-Cache-2.04_1, p5-Cache-Cache-1.06, p5-Class-AutoClass-1.01, p5-Class-C3-0.24, p5-Class-Inspector-1.28, p5-Class-Load-0.20, p5-Class-Load-XS-0.06, p5-Clone-0.34, p5-Convert-BinHex-1.119, p5-Convert-Binary-C-0.76, p5-Crypt-RC4-2.02, p5-Crypt-SSLeay-0.64, p5-DBD-mysql-4.021, p5-DBI-1.625, p5-Data-OptList-0.107, p5-Data-Stag-0.11, p5-Devel-GlobalDestruction-0.10, p5-Digest-HMAC-1.03, p5-Digest-Perl-MD5-1.8, p5-Digest-SHA1-2.13, p5-Dist-CheckConflicts-0.02, p5-Email-Date-Format-1.002, p5-Encode-Locale-1.03, p5-Error-0.17019, p5-Eval-Closure-0.08, p5-File-Listing-6.04, p5-File-NFSLock-1.21, p5-GD-2.49, p5-GD-SVG-0.33_4, p5-Graph-0.94,1, p5-GraphViz-2.14, p5-HTML-Parser-3.69, p5-HTML-Tagset-3.20, p5-HTML-Tree-5.03, p5-HTTP-Cookies-6.01, p5-HTTP-Daemon-6.01, p5-HTTP-Date-6.02, p5-HTTP-Message-6.06_1, p5-HTTP-Negotiate-6.01, p5-Heap-0.80, p5-IO-HTML-1.00, p5-IO-Socket-IP-0.19, p5-IO-Socket-SSL-1.84, p5-IO-String-1.08, p5-IO-Tty-1.10, p5-IO-stringy-2.110, p5-IPC-Run-0.92, p5-IPC-ShareLite-0.17, p5-LWP-MediaTypes-6.02, p5-LWP-Protocol-https-6.03, p5-List-MoreUtils-0.33, p5-MIME-Lite-3.02.9, p5-MIME-Tools-5.504,2, p5-MIME-Types-1.38, p5-MRO-Compat-0.12, p5-Mail-Tools-2.12, p5-Math-Derivative-0.01, p5-Math-Random-0.71, p5-Math-Spline-0.01, p5-Module-Implementation-0.06, p5-Module-Runtime-0.013, p5-Moose-2.0801, p5-Mozilla-CA-20130114, p5-Net-HTTP-6.06, p5-Net-SSLeay-1.54, p5-OLE-Storage_Lite-0.19, p5-Package-DeprecationManager-0.13, p5-Package-Stash-0.34, p5-Package-Stash-XS-0.26, p5-Params-Util-1.07, p5-Parse-RecDescent-1.967.009_1, p5-PostScript-0.06, p5-SOAP-Lite-0.715, p5-SVG-2.54, p5-SVG-Graph-0.04, p5-Scalar-List-Utils-1.27,1, p5-Set-Scalar-1.25, p5-Socket-2.009, p5-Spreadsheet-ParseExcel-0.59,1, p5-Statistics-Descriptive-3.0604, p5-Sub-Exporter-0.985, p5-Sub-Exporter-Progressive-0.001.006, p5-Sub-Install-0.926, p5-Sub-Name-0.05, p5-Task-Weaken-1.04, p5-Text-Iconv-1.7, p5-Text-Shellwords-1.08, p5-Tie-IxHash-1.23, p5-TimeDate-2.30_1,1, p5-Tree-DAG_Node-1.06, p5-Try-Tiny-0.12, p5-URI-1.60, p5-WWW-RobotRules-6.02, p5-XML-DOM-1.44, p5-XML-DOM-XPath-0.14, p5-XML-Filter-BufferText-1.01, p5-XML-NamespaceSupport-1.11, p5-XML-Parser-2.41_1, p5-XML-RegExp-0.04, p5-XML-SAX-0.99, p5-XML-SAX-Base-1.08, p5-XML-SAX-Writer-0.53, p5-XML-Twig-3.42, p5-XML-Writer-0.615, p5-XML-XPath-1.13, p5-XML-XPathEngine-0.13, p5-bioperl-1.6.1_4, p5-libwww-6.05, p5-libxml-0.08, pango-1.30.1, pcre-8.32, perl-5.14.2_3, pixman-0.24.2, pkgconf-0.9.1_2, png-1.5.14, printproto-1.0.5, python27-2.7.3_6, renderproto-0.11.1, xcb-util-0.3.9_1,1, xcb-util-renderutil-0.3.8, xextproto-7.2.0, xorg-fonts-truetype-7.5.1, xproto-7.0.22
Also listed in: Perl5

p5-Bio-MAGETAB-1.27
Data model and utility API for the MAGE-TAB format
Long description | Sources | Main Web Site
Maintained by: perl@FreeBSD.org
Requires: p5-Algorithm-C3-0.08, p5-B-Hooks-EndOfScope-0.12, p5-Carp-Clan-6.04, p5-Class-C3-0.24, p5-Class-Load-0.20, p5-Class-Load-XS-0.06, p5-Class-Singleton-1.4, p5-Data-OptList-0.107, p5-Date-Manip-6.34, p5-DateTime-0.78, p5-DateTime-Format-DateManip-0.04, p5-DateTime-Locale-0.45, p5-DateTime-TimeZone-1.58, p5-Devel-GlobalDestruction-0.10, p5-Digest-HMAC-1.03, p5-Dist-CheckConflicts-0.02, p5-Email-Valid-0.190, p5-Eval-Closure-0.08, p5-IO-Socket-INET6-2.69, p5-List-MoreUtils-0.33, p5-MRO-Compat-0.12, p5-Mail-Tools-2.12, p5-Module-Implementation-0.06, p5-Module-Runtime-0.013, p5-Moose-2.0801, p5-MooseX-FollowPBP-0.05, p5-MooseX-Types-0.35_1, p5-Net-DNS-0.72, p5-Net-Domain-TLD-1.69, p5-Package-DeprecationManager-0.13, p5-Package-Stash-0.34, p5-Package-Stash-XS-0.26, p5-Params-Coerce-0.14_1, p5-Params-Util-1.07, p5-Params-Validate-1.07, p5-Parse-RecDescent-1.967.009_1, p5-Socket6-0.23, p5-Sub-Exporter-0.985, p5-Sub-Exporter-Progressive-0.001.006, p5-Sub-Identify-0.04, p5-Sub-Install-0.926, p5-Sub-Name-0.05, p5-Task-Weaken-1.04, p5-Text-CSV_XS-0.95, p5-TimeDate-2.30_1,1, p5-Try-Tiny-0.12, p5-URI-1.60, p5-YAML-Syck-1.25, p5-namespace-clean-0.24, perl-5.14.2_3
Also listed in: Perl5

p5-Bio-NEXUS-0.78
Object-oriented Perl API for the NEXUS file format
Long description | Sources | Main Web Site
Maintained by: perl@FreeBSD.org
Requires: p5-Clone-PP-1.02, perl-5.14.2_3
Also listed in: Perl5

p5-Bio-Phylo-0.52
Phylogenetic analysis using Perl
Long description | Sources | Main Web Site
Maintained by: perl@FreeBSD.org
Requires: bitstream-vera-1.10_5, cairo-1.10.2_5,2, encodings-1.0.4,1, expat-2.0.1_2, font-bh-ttf-1.0.3, font-misc-ethiopic-1.0.3, font-misc-meltho-1.0.3, font-util-1.3.0, fontconfig-2.9.0,1, freetype2-2.4.11, gamin-0.1.10_5, gd-2.0.35_8,1, gettext-0.18.1.1_1, gio-fam-backend-2.34.3, glib-2.34.3, gnomehier-3.0, gobject-introspection-1.34.2, graphviz-2.30.1, jpeg-8_4, kbproto-1.0.5, libICE-1.0.7,1, libSM-1.2.0,1, libX11-1.4.4,1, libXau-1.0.6, libXaw-1.0.9,2, libXdmcp-1.1.0, libXext-1.3.0_1,1, libXft-2.3.1, libXmu-1.1.0,1, libXp-1.0.1,1, libXpm-3.5.9, libXrender-0.9.6, libXt-1.1.1,1, libffi-3.0.13, libfontenc-1.1.0, libiconv-1.14_1, libltdl-2.4.2, libpthread-stubs-0.3_3, libxcb-1.7, libxml2-2.8.0_1, mkfontdir-1.0.7, mkfontscale-1.1.0, mysql-client-5.5.30, p5-AcePerl-1.92_2, p5-Algorithm-C3-0.08, p5-Algorithm-Munkres-0.08, p5-Array-Compare-2.02, p5-Authen-NTLM-1.09, p5-Bio-ASN1-EntrezGene-1.091, p5-Cache-2.04_1, p5-Cache-Cache-1.06, p5-Class-AutoClass-1.01, p5-Class-C3-0.24, p5-Class-Inspector-1.28, p5-Class-Load-0.20, p5-Class-Load-XS-0.06, p5-Clone-0.34, p5-Convert-BinHex-1.119, p5-Convert-Binary-C-0.76, p5-Crypt-RC4-2.02, p5-Crypt-SSLeay-0.64, p5-DBD-mysql-4.021, p5-DBI-1.625, p5-Data-OptList-0.107, p5-Data-Stag-0.11, p5-Data-TemporaryBag-0.09, p5-Devel-GlobalDestruction-0.10, p5-Digest-HMAC-1.03, p5-Digest-Perl-MD5-1.8, p5-Digest-SHA1-2.13, p5-Dist-CheckConflicts-0.02, p5-Email-Date-Format-1.002, p5-Encode-Locale-1.03, p5-Error-0.17019, p5-Eval-Closure-0.08, p5-File-Listing-6.04, p5-File-NFSLock-1.21, p5-Font-TTF-1.02, p5-GD-2.49, p5-GD-SVG-0.33_4, p5-Graph-0.94,1, p5-GraphViz-2.14, p5-HTML-Parser-3.69, p5-HTML-Tagset-3.20, p5-HTML-Tree-5.03, p5-HTTP-Cookies-6.01, p5-HTTP-Daemon-6.01, p5-HTTP-Date-6.02, p5-HTTP-Message-6.06_1, p5-HTTP-Negotiate-6.01, p5-Heap-0.80, p5-IO-HTML-1.00, p5-IO-Socket-IP-0.19, p5-IO-Socket-SSL-1.84, p5-IO-String-1.08, p5-IO-Tty-1.10, p5-IO-stringy-2.110, p5-IPC-Run-0.92, p5-IPC-ShareLite-0.17, p5-LWP-MediaTypes-6.02, p5-LWP-Protocol-https-6.03, p5-List-MoreUtils-0.33, p5-MIME-Lite-3.02.9, p5-MIME-Tools-5.504,2, p5-MIME-Types-1.38, p5-MRO-Compat-0.12, p5-Mail-Tools-2.12, p5-Math-Bezier-Convert-0.02, p5-Math-CDF-0.1, p5-Math-Derivative-0.01, p5-Math-Random-0.71, p5-Math-Spline-0.01, p5-Module-Implementation-0.06, p5-Module-Runtime-0.013, p5-Moose-2.0801, p5-Mozilla-CA-20130114, p5-Net-HTTP-6.06, p5-Net-SSLeay-1.54, p5-OLE-Storage_Lite-0.19, p5-PDF-API2-2.020, p5-Package-DeprecationManager-0.13, p5-Package-Stash-0.34, p5-Package-Stash-XS-0.26, p5-Params-Util-1.07, p5-Parse-RecDescent-1.967.009_1, p5-PostScript-0.06, p5-SOAP-Lite-0.715, p5-SVG-2.54, p5-SVG-Graph-0.04, p5-SWF-Builder-0.16, p5-SWF-File-0.42_1,1, p5-Scalar-List-Utils-1.27,1, p5-Set-Scalar-1.25, p5-Socket-2.009, p5-Spreadsheet-ParseExcel-0.59,1, p5-Statistics-Descriptive-3.0604, p5-Sub-Exporter-0.985, p5-Sub-Exporter-Progressive-0.001.006, p5-Sub-Install-0.926, p5-Sub-Name-0.05, p5-Task-Weaken-1.04, p5-Text-Iconv-1.7, p5-Text-Shellwords-1.08, p5-Tie-IxHash-1.23, p5-TimeDate-2.30_1,1, p5-Tree-DAG_Node-1.06, p5-Try-Tiny-0.12, p5-URI-1.60, p5-WWW-RobotRules-6.02, p5-XML-DOM-1.44, p5-XML-DOM-XPath-0.14, p5-XML-Filter-BufferText-1.01, p5-XML-LibXML-2.0004_1,1, p5-XML-NamespaceSupport-1.11, p5-XML-Parser-2.41_1, p5-XML-RegExp-0.04, p5-XML-SAX-0.99, p5-XML-SAX-Base-1.08, p5-XML-SAX-Writer-0.53, p5-XML-Twig-3.42, p5-XML-Writer-0.615, p5-XML-XML2JSON-0.06, p5-XML-XPath-1.13, p5-XML-XPathEngine-0.13, p5-YAML-Syck-1.25, p5-bioperl-1.6.1_4, p5-libwww-6.05, p5-libxml-0.08, pango-1.30.1, pcre-8.32, perl-5.14.2_3, pixman-0.24.2, pkgconf-0.9.1_2, png-1.5.14, printproto-1.0.5, python27-2.7.3_6, renderproto-0.11.1, xcb-util-0.3.9_1,1, xcb-util-renderutil-0.3.8, xextproto-7.2.0, xorg-fonts-truetype-7.5.1, xproto-7.0.22
Also listed in: Perl5

p5-Bio-SCF-1.03
Read and Update SCF Chromatographic Sequence Files
Long description | Sources | Main Web Site
Maintained by: wen@FreeBSD.org
Requires: ca_root_nss-3.14.3, curl-7.24.0_2, io_lib-1.12.5, perl-5.14.2_3
Also listed in: Perl5

p5-bioperl-1.6.1_4
A collection of Perl modules for bioinformatics
Long description | Sources | Main Web Site
Maintained by: wen@FreeBSD.org
Requires: bitstream-vera-1.10_5, cairo-1.10.2_5,2, encodings-1.0.4,1, expat-2.0.1_2, font-bh-ttf-1.0.3, font-misc-ethiopic-1.0.3, font-misc-meltho-1.0.3, font-util-1.3.0, fontconfig-2.9.0,1, freetype2-2.4.11, gamin-0.1.10_5, gd-2.0.35_8,1, gettext-0.18.1.1_1, gio-fam-backend-2.34.3, glib-2.34.3, gnomehier-3.0, gobject-introspection-1.34.2, graphviz-2.30.1, jpeg-8_4, kbproto-1.0.5, libICE-1.0.7,1, libSM-1.2.0,1, libX11-1.4.4,1, libXau-1.0.6, libXaw-1.0.9,2, libXdmcp-1.1.0, libXext-1.3.0_1,1, libXft-2.3.1, libXmu-1.1.0,1, libXp-1.0.1,1, libXpm-3.5.9, libXrender-0.9.6, libXt-1.1.1,1, libffi-3.0.13, libfontenc-1.1.0, libiconv-1.14_1, libltdl-2.4.2, libpthread-stubs-0.3_3, libxcb-1.7, mkfontdir-1.0.7, mkfontscale-1.1.0, mysql-client-5.5.30, p5-AcePerl-1.92_2, p5-Algorithm-C3-0.08, p5-Algorithm-Munkres-0.08, p5-Array-Compare-2.02, p5-Authen-NTLM-1.09, p5-Bio-ASN1-EntrezGene-1.091, p5-Cache-2.04_1, p5-Cache-Cache-1.06, p5-Class-AutoClass-1.01, p5-Class-C3-0.24, p5-Class-Inspector-1.28, p5-Class-Load-0.20, p5-Class-Load-XS-0.06, p5-Clone-0.34, p5-Convert-BinHex-1.119, p5-Convert-Binary-C-0.76, p5-Crypt-RC4-2.02, p5-Crypt-SSLeay-0.64, p5-DBD-mysql-4.021, p5-DBI-1.625, p5-Data-OptList-0.107, p5-Data-Stag-0.11, p5-Devel-GlobalDestruction-0.10, p5-Digest-HMAC-1.03, p5-Digest-Perl-MD5-1.8, p5-Digest-SHA1-2.13, p5-Dist-CheckConflicts-0.02, p5-Email-Date-Format-1.002, p5-Encode-Locale-1.03, p5-Error-0.17019, p5-Eval-Closure-0.08, p5-File-Listing-6.04, p5-File-NFSLock-1.21, p5-GD-2.49, p5-GD-SVG-0.33_4, p5-Graph-0.94,1, p5-GraphViz-2.14, p5-HTML-Parser-3.69, p5-HTML-Tagset-3.20, p5-HTML-Tree-5.03, p5-HTTP-Cookies-6.01, p5-HTTP-Daemon-6.01, p5-HTTP-Date-6.02, p5-HTTP-Message-6.06_1, p5-HTTP-Negotiate-6.01, p5-Heap-0.80, p5-IO-HTML-1.00, p5-IO-Socket-IP-0.19, p5-IO-Socket-SSL-1.84, p5-IO-String-1.08, p5-IO-Tty-1.10, p5-IO-stringy-2.110, p5-IPC-Run-0.92, p5-IPC-ShareLite-0.17, p5-LWP-MediaTypes-6.02, p5-LWP-Protocol-https-6.03, p5-List-MoreUtils-0.33, p5-MIME-Lite-3.02.9, p5-MIME-Tools-5.504,2, p5-MIME-Types-1.38, p5-MRO-Compat-0.12, p5-Mail-Tools-2.12, p5-Math-Derivative-0.01, p5-Math-Random-0.71, p5-Math-Spline-0.01, p5-Module-Build-0.4004, p5-Module-Implementation-0.06, p5-Module-Runtime-0.013, p5-Moose-2.0801, p5-Mozilla-CA-20130114, p5-Net-HTTP-6.06, p5-Net-SSLeay-1.54, p5-OLE-Storage_Lite-0.19, p5-Package-DeprecationManager-0.13, p5-Package-Stash-0.34, p5-Package-Stash-XS-0.26, p5-Params-Util-1.07, p5-Parse-RecDescent-1.967.009_1, p5-PostScript-0.06, p5-SOAP-Lite-0.715, p5-SVG-2.54, p5-SVG-Graph-0.04, p5-Scalar-List-Utils-1.27,1, p5-Set-Scalar-1.25, p5-Socket-2.009, p5-Spreadsheet-ParseExcel-0.59,1, p5-Statistics-Descriptive-3.0604, p5-Sub-Exporter-0.985, p5-Sub-Exporter-Progressive-0.001.006, p5-Sub-Install-0.926, p5-Sub-Name-0.05, p5-Task-Weaken-1.04, p5-Text-Iconv-1.7, p5-Text-Shellwords-1.08, p5-Tie-IxHash-1.23, p5-TimeDate-2.30_1,1, p5-Tree-DAG_Node-1.06, p5-Try-Tiny-0.12, p5-URI-1.60, p5-WWW-RobotRules-6.02, p5-XML-DOM-1.44, p5-XML-DOM-XPath-0.14, p5-XML-Filter-BufferText-1.01, p5-XML-NamespaceSupport-1.11, p5-XML-Parser-2.41_1, p5-XML-RegExp-0.04, p5-XML-SAX-0.99, p5-XML-SAX-Base-1.08, p5-XML-SAX-Writer-0.53, p5-XML-Twig-3.42, p5-XML-Writer-0.615, p5-XML-XPath-1.13, p5-XML-XPathEngine-0.13, p5-libwww-6.05, p5-libxml-0.08, pango-1.30.1, pcre-8.32, perl-5.14.2_3, pixman-0.24.2, pkgconf-0.9.1_2, png-1.5.14, printproto-1.0.5, python27-2.7.3_6, renderproto-0.11.1, xcb-util-0.3.9_1,1, xcb-util-renderutil-0.3.8, xextproto-7.2.0, xorg-fonts-truetype-7.5.1, xproto-7.0.22
Also listed in: Perl5

p5-bioperl-run-1.6.1_4
Wrapper modules for common bioinformatics tools
Long description | Sources | Main Web Site
Maintained by: mauricio@arareko.net
Requires: bitstream-vera-1.10_5, cairo-1.10.2_5,2, encodings-1.0.4,1, expat-2.0.1_2, font-bh-ttf-1.0.3, font-misc-ethiopic-1.0.3, font-misc-meltho-1.0.3, font-util-1.3.0, fontconfig-2.9.0,1, freetype2-2.4.11, gamin-0.1.10_5, gd-2.0.35_8,1, gettext-0.18.1.1_1, gio-fam-backend-2.34.3, glib-2.34.3, gnomehier-3.0, gobject-introspection-1.34.2, graphviz-2.30.1, jpeg-8_4, kbproto-1.0.5, libICE-1.0.7,1, libSM-1.2.0,1, libX11-1.4.4,1, libXau-1.0.6, libXaw-1.0.9,2, libXdmcp-1.1.0, libXext-1.3.0_1,1, libXft-2.3.1, libXmu-1.1.0,1, libXp-1.0.1,1, libXpm-3.5.9, libXrender-0.9.6, libXt-1.1.1,1, libffi-3.0.13, libfontenc-1.1.0, libiconv-1.14_1, libltdl-2.4.2, libpthread-stubs-0.3_3, libxcb-1.7, mkfontdir-1.0.7, mkfontscale-1.1.0, mysql-client-5.5.30, p5-AcePerl-1.92_2, p5-Algorithm-C3-0.08, p5-Algorithm-Diff-1.1902, p5-Algorithm-Munkres-0.08, p5-Array-Compare-2.02, p5-Authen-NTLM-1.09, p5-Bio-ASN1-EntrezGene-1.091, p5-Cache-2.04_1, p5-Cache-Cache-1.06, p5-Class-AutoClass-1.01, p5-Class-C3-0.24, p5-Class-Inspector-1.28, p5-Class-Load-0.20, p5-Class-Load-XS-0.06, p5-Clone-0.34, p5-Convert-BinHex-1.119, p5-Convert-Binary-C-0.76, p5-Crypt-RC4-2.02, p5-Crypt-SSLeay-0.64, p5-DBD-mysql-4.021, p5-DBI-1.625, p5-Data-OptList-0.107, p5-Data-Stag-0.11, p5-Devel-GlobalDestruction-0.10, p5-Digest-HMAC-1.03, p5-Digest-Perl-MD5-1.8, p5-Digest-SHA1-2.13, p5-Dist-CheckConflicts-0.02, p5-Email-Date-Format-1.002, p5-Encode-Locale-1.03, p5-Error-0.17019, p5-Eval-Closure-0.08, p5-File-Listing-6.04, p5-File-NFSLock-1.21, p5-GD-2.49, p5-GD-SVG-0.33_4, p5-Graph-0.94,1, p5-GraphViz-2.14, p5-HTML-Parser-3.69, p5-HTML-Tagset-3.20, p5-HTML-Tree-5.03, p5-HTTP-Cookies-6.01, p5-HTTP-Daemon-6.01, p5-HTTP-Date-6.02, p5-HTTP-Message-6.06_1, p5-HTTP-Negotiate-6.01, p5-Heap-0.80, p5-IO-HTML-1.00, p5-IO-Socket-IP-0.19, p5-IO-Socket-SSL-1.84, p5-IO-String-1.08, p5-IO-Tty-1.10, p5-IO-stringy-2.110, p5-IPC-Run-0.92, p5-IPC-ShareLite-0.17, p5-LWP-MediaTypes-6.02, p5-LWP-Protocol-https-6.03, p5-List-MoreUtils-0.33, p5-MIME-Lite-3.02.9, p5-MIME-Tools-5.504,2, p5-MIME-Types-1.38, p5-MRO-Compat-0.12, p5-Mail-Tools-2.12, p5-Math-Derivative-0.01, p5-Math-Random-0.71, p5-Math-Spline-0.01, p5-Module-Build-0.4004, p5-Module-Implementation-0.06, p5-Module-Runtime-0.013, p5-Moose-2.0801, p5-Mozilla-CA-20130114, p5-Net-HTTP-6.06, p5-Net-SSLeay-1.54, p5-OLE-Storage_Lite-0.19, p5-Package-DeprecationManager-0.13, p5-Package-Stash-0.34, p5-Package-Stash-XS-0.26, p5-Params-Util-1.07, p5-Parse-RecDescent-1.967.009_1, p5-PostScript-0.06, p5-SOAP-Lite-0.715, p5-SVG-2.54, p5-SVG-Graph-0.04, p5-Scalar-List-Utils-1.27,1, p5-Set-Scalar-1.25, p5-Socket-2.009, p5-Spreadsheet-ParseExcel-0.59,1, p5-Statistics-Descriptive-3.0604, p5-Sub-Exporter-0.985, p5-Sub-Exporter-Progressive-0.001.006, p5-Sub-Install-0.926, p5-Sub-Name-0.05, p5-Task-Weaken-1.04, p5-Text-Iconv-1.7, p5-Text-Shellwords-1.08, p5-Tie-IxHash-1.23, p5-TimeDate-2.30_1,1, p5-Tree-DAG_Node-1.06, p5-Try-Tiny-0.12, p5-URI-1.60, p5-WWW-RobotRules-6.02, p5-XML-DOM-1.44, p5-XML-DOM-XPath-0.14, p5-XML-Filter-BufferText-1.01, p5-XML-NamespaceSupport-1.11, p5-XML-Parser-2.41_1, p5-XML-RegExp-0.04, p5-XML-SAX-0.99, p5-XML-SAX-Base-1.08, p5-XML-SAX-Writer-0.53, p5-XML-Twig-3.42, p5-XML-Writer-0.615, p5-XML-XPath-1.13, p5-XML-XPathEngine-0.13, p5-bioperl-1.6.1_4, p5-libwww-6.05, p5-libxml-0.08, pango-1.30.1, pcre-8.32, perl-5.14.2_3, pixman-0.24.2, pkgconf-0.9.1_2, png-1.5.14, printproto-1.0.5, python27-2.7.3_6, renderproto-0.11.1, xcb-util-0.3.9_1,1, xcb-util-renderutil-0.3.8, xextproto-7.2.0, xorg-fonts-truetype-7.5.1, xproto-7.0.22
Also listed in: Perl5

paml-4.4c
Phylogenetic Analysis by Maximum Likelihood (PAML)
Long description | Sources | Main Web Site
Maintained by: wen@FreeBSD.org
Requires: gettext-0.18.1.1_1, gmake-3.82_1, libiconv-1.14_1

phd2fasta-0.990622.f
A converter from output files of Phred/Consed to FASTA files
Long description | Sources | Main Web Site
Maintained by: mzaki@biol.s.u-tokyo.ac.jp

phrap-0.990329
Phrap is a program for assembling shotgun DNA sequence data
Long description | Sources | Main Web Site
Maintained by: mzaki@biol.s.u-tokyo.ac.jp

phred-0.020425.c
Base calling and quality value assignment on DNA sequencing
Long description | Sources | Main Web Site
Maintained by: mzaki@biol.s.u-tokyo.ac.jp

phylip-3.69
A Phylogeny Inference Package
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: bash-4.2.42, gettext-0.18.1.1_1, gmake-3.82_1, kbproto-1.0.5, libICE-1.0.7,1, libSM-1.2.0,1, libX11-1.4.4,1, libXau-1.0.6, libXaw-1.0.9,2, libXdmcp-1.1.0, libXext-1.3.0_1,1, libXmu-1.1.0,1, libXp-1.0.1,1, libXpm-3.5.9, libXt-1.1.1,1, libiconv-1.14_1, libpthread-stubs-0.3_3, libxcb-1.7, pkgconf-0.9.1_2, printproto-1.0.5, xextproto-7.2.0, xproto-7.0.22

phyml-20121109
Simple, fast, and accurate algorithm to estimate large phylogenies
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: autoconf-2.69, autoconf-wrapper-20101119, automake-1.12.6, automake-wrapper-20101119, m4-1.4.16_1,1, perl-5.14.2_3

platon-2007.01.09_5
Tool for viewing molecular/crystallographic structures
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: binutils-2.23.1, gcc-4.6.3, gcc-ecj-4.5, gettext-0.18.1.1_1, gmp-5.1.1, kbproto-1.0.5, libX11-1.4.4,1, libXau-1.0.6, libXdmcp-1.1.0, libiconv-1.14_1, libpthread-stubs-0.3_3, libxcb-1.7, mpc-0.9, mpfr-3.1.2, pkgconf-0.9.1_2, xproto-7.0.22

plink-1.07
Whole genome association analysis toolset
Long description | Sources | Main Web Site
Maintained by: jwbacon@tds.net
Requires: binutils-2.23.1, blas-3.4.2, gcc-4.6.3, gcc-ecj-4.5, gettext-0.18.1.1_1, gmake-3.82_1, gmp-5.1.1, lapack-3.4.2, libiconv-1.14_1, mpc-0.9, mpfr-3.1.2
Also listed in: Science

plinkseq-0.08_1
Toolset for working with human genetic variation data
Long description | Sources | Main Web Site
Maintained by: jwbacon@tds.net
Requires: protobuf-2.5.0
Also listed in: Science

povchem-1.0_7
Simple yet powerful tool to generate POV from a PDB file
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: jbigkit-1.6, jpeg-8_4, kbproto-1.0.5, libX11-1.4.4,1, libXau-1.0.6, libXdmcp-1.1.0, libpthread-stubs-0.3_3, libxcb-1.7, pkgconf-0.9.1_2, png-1.5.14, povray-3.6.1_11, povray-meta-0.1, svgalib-1.4.3_6, tiff-4.0.3, xproto-7.0.22
Also listed in: Graphics

primer3-1.1.4
Primer3 helps to choose primers for PCR reactions
Long description | Sources | Main Web Site
Maintained by: wen@FreeBSD.org
Requires: gettext-0.18.1.1_1, gmake-3.82_1, libiconv-1.14_1

protomol-2.0.3_8
OO, component based, framework for molecular dynamics (MD) simulations
Long description | Sources | Main Web Site
Maintained by: sangwoos@gmail.com
Requires: damageproto-1.2.1, dri2proto-2.6, expat-2.0.1_2, fixesproto-5.0, freeglut-2.8.0, inputproto-2.0.2, jbigkit-1.6, jpeg-8_4, kbproto-1.0.5, libGL-7.6.1_3, libGLU-7.6.1_2, libICE-1.0.7,1, libSM-1.2.0,1, libX11-1.4.4,1, libXau-1.0.6, libXdamage-1.1.3, libXdmcp-1.1.0, libXext-1.3.0_1,1, libXfixes-5.0, libXi-1.4.5,1, libXmu-1.1.0,1, libXrandr-1.3.2, libXrender-0.9.6, libXt-1.1.1,1, libXxf86vm-1.1.1, libdrm-2.4.17_1, libpciaccess-0.12.1, libpthread-stubs-0.3_3, libxcb-1.7, pciids-20130327, pkgconf-0.9.1_2, png-1.5.14, randrproto-1.3.2, renderproto-0.11.1, tiff-4.0.3, xextproto-7.2.0, xf86vidmodeproto-2.3.1, xproto-7.0.22

psi88-1.0_3
Plotting wavefunctions (molecular orbitals) in 3D
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: binutils-2.23.1, gcc-4.6.3, gcc-ecj-4.5, gettext-0.18.1.1_1, gmp-5.1.1, libiconv-1.14_1, mpc-0.9, mpfr-3.1.2

py27-biopython-1.60
Collection of Python modules for bioinformatics
Long description | Sources | Main Web Site
Maintained by: mauricio@arareko.net
Requires: binutils-2.23.1, blas-3.4.2, gcc-4.6.3, gcc-ecj-4.5, gettext-0.18.1.1_1, gmp-5.1.1, lapack-3.4.2, libiconv-1.14_1, mpc-0.9, mpfr-3.1.2, py27-distribute-0.6.35, py27-nose-1.2.1, py27-numpy-1.6.2_1,1, py27-reportlab-1.21.2_3, python27-2.7.3_6, suitesparse-4.0.2_1
Also listed in: Python

pycogent-1.5.3
A toolkit for statistical analysis of biological sequences
Long description | Sources | Main Web Site
Maintained by: wen@FreeBSD.org
Requires: binutils-2.23.1, blas-3.4.2, cython-0.17.1, gcc-4.6.3, gcc-ecj-4.5, gettext-0.18.1.1_1, gmp-5.1.1, lapack-3.4.2, libiconv-1.14_1, libxml2-2.8.0_1, mpc-0.9, mpfr-3.1.2, mysql-client-5.5.30, pkgconf-0.9.1_2, postgresql-client-9.0.13, py27-Babel-0.9.6, py27-Jinja2-2.6_1, py27-MarkupSafe-0.15, py27-MySQLdb-1.2.3_2, py27-distribute-0.6.35, py27-docutils-0.10, py27-nose-1.2.1, py27-numpy-1.6.2_1,1, py27-psycopg2-2.4.6, py27-pygments-1.5, py27-sphinx-1.1.3_1, py27-sqlalchemy06-0.6.9, py27-sqlite3-2.7.3_3, python27-2.7.3_6, sqlite3-3.7.14.1, suitesparse-4.0.2_1
Also listed in: Python

pyfasta-0.4.5
Fast, memory-efficient, pythonic access to fasta sequence files
Long description | Sources | Main Web Site
Maintained by: wen@FreeBSD.org
Requires: binutils-2.23.1, blas-3.4.2, gcc-4.6.3, gcc-ecj-4.5, gettext-0.18.1.1_1, gmp-5.1.1, lapack-3.4.2, libiconv-1.14_1, mpc-0.9, mpfr-3.1.2, py27-distribute-0.6.35, py27-nose-1.2.1, py27-numpy-1.6.2_1,1, python27-2.7.3_6, suitesparse-4.0.2_1
Also listed in: Python

pymol-1.5.0.1.3978_2
Free and Open-Source molecular modeling system
Long description | Sources | Main Web Site
Maintained by: maho@FreeBSD.org
Requires: blt-2.4z_7, damageproto-1.2.1, dri2proto-2.6, expat-2.0.1_2, fixesproto-5.0, fontconfig-2.9.0,1, freeglut-2.8.0, freetype2-2.4.11, gettext-0.18.1.1_1, glew-1.9.0, gmake-3.82_1, inputproto-2.0.2, jpeg-8_4, kbproto-1.0.5, libGL-7.6.1_3, libGLU-7.6.1_2, libICE-1.0.7,1, libSM-1.2.0,1, libX11-1.4.4,1, libXau-1.0.6, libXdamage-1.1.3, libXdmcp-1.1.0, libXext-1.3.0_1,1, libXfixes-5.0, libXft-2.3.1, libXi-1.4.5,1, libXmu-1.1.0,1, libXrandr-1.3.2, libXrender-0.9.6, libXt-1.1.1,1, libXxf86vm-1.1.1, libdrm-2.4.17_1, libiconv-1.14_1, libpciaccess-0.12.1, libpthread-stubs-0.3_3, libxcb-1.7, pciids-20130327, pkgconf-0.9.1_2, png-1.5.14, py27-Pmw-1.3.2_2, py27-numeric-24.2_3, py27-tkinter-2.7.3_4, python27-2.7.3_6, randrproto-1.3.2, renderproto-0.11.1, tcl-8.5.13, tk-8.5.13, xextproto-7.2.0, xf86vidmodeproto-2.3.1, xproto-7.0.22
Also listed in: Python

python-nexus-0.87
A generic nexus file format reader for python
Long description | Sources | Main Web Site
Maintained by: wen@FreeBSD.org
Requires: gettext-0.18.1.1_1, libiconv-1.14_1, py27-distribute-0.6.35, python27-2.7.3_6
Also listed in: Python

rasmol-2.7.2.1.1_3
Fast Molecular Visualization Program
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: gccmakedep-1.0.2, imake-1.0.4,1, inputproto-2.0.2, kbproto-1.0.5, libX11-1.4.4,1, libXau-1.0.6, libXdmcp-1.1.0, libXext-1.3.0_1,1, libXi-1.4.5,1, libpthread-stubs-0.3_3, libxcb-1.7, makedepend-1.0.3,1, perl-5.14.2_3, pkgconf-0.9.1_2, xextproto-7.2.0, xorg-cf-files-1.0.4, xproto-7.0.22

raster3d-3.0.2_1
A set of tools for generating raster images of proteins and molecules
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: binutils-2.23.1, expat-2.0.1_2, fontconfig-2.9.0,1, freetype2-2.4.11, gcc-4.6.3, gcc-ecj-4.5, gd-2.0.35_8,1, gettext-0.18.1.1_1, gmp-5.1.1, jbigkit-1.6, jpeg-8_4, libiconv-1.14_1, mpc-0.9, mpfr-3.1.2, png-1.5.14, tiff-4.0.3
Also listed in: Graphics

recombine-1.41
A program to fit population models across sites
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org

ruby18-bio-1.4.1
Integrated environment for Bioinformatics written in Ruby
Long description | Sources | Main Web Site
Maintained by: mauricio@arareko.net
Requires: ruby-1.8.7.371,1
Also listed in: Ruby

seaview-4.4.1
Multiple DNA/protein sequence alignment editor
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: damageproto-1.2.1, dri2proto-2.6, expat-2.0.1_2, fixesproto-5.0, fltk-1.3.2, fontconfig-2.9.0,1, freetype2-2.4.11, gettext-0.18.1.1_1, gmake-3.82_1, jpeg-8_4, kbproto-1.0.5, libGL-7.6.1_3, libGLU-7.6.1_2, libX11-1.4.4,1, libXau-1.0.6, libXdamage-1.1.3, libXdmcp-1.1.0, libXext-1.3.0_1,1, libXfixes-5.0, libXft-2.3.1, libXinerama-1.1.1,1, libXrender-0.9.6, libXxf86vm-1.1.1, libdrm-2.4.17_1, libiconv-1.14_1, libpciaccess-0.12.1, libpthread-stubs-0.3_3, libxcb-1.7, pciids-20130327, pdflib-7.0.5_2, pkgconf-0.9.1_2, png-1.5.14, renderproto-0.11.1, xextproto-7.2.0, xf86vidmodeproto-2.3.1, xineramaproto-1.2.1, xproto-7.0.22

seqan-1.3.1
C++ Sequence Analysis Library
Long description | Sources | Main Web Site
Maintained by: h2+fbsdports@fsfe.org
Requires: binutils-2.23.1, cmake-2.8.10.2, cmake-modules-2.8.10.2, gcc-4.6.3, gcc-ecj-4.5, gettext-0.18.1.1_1, gmp-5.1.1, libiconv-1.14_1, mpc-0.9, mpfr-3.1.2, python27-2.7.3_6

seqio-1.2.2_1
A set of C functions which can read/write biological sequence files
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org

sim4-2003.09.21
An algorithm for aligning expressed DNA with genomic sequences
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org

ssaha-3.1c_1
Very fast matching and alignment of DNA sequences
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: gettext-0.18.1.1_1, gmake-3.82_1, libiconv-1.14_1

tRNAscan-SE-1.23_1
An improved tool for transfer RNA detection
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: perl-5.14.2_3

t_coffee-9.03
A multiple DNA or protein sequence alignment package
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: binutils-2.23.1, clustalw-2.1_1, gcc-4.6.3, gcc-ecj-4.5, gettext-0.18.1.1_1, gmp-5.1.1, libiconv-1.14_1, mpc-0.9, mpfr-3.1.2

tinker-6.2.01
A general purpose molecular modelling package
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: binutils-2.23.1, gcc-4.6.3, gcc-ecj-4.5, gettext-0.18.1.1_1, gmp-5.1.1, libiconv-1.14_1, mpc-0.9, mpfr-3.1.2

treepuzzle-5.2
Maximum likelihood phylogeny reconstruction using quartets
Long description | Sources | Main Web Site
Maintained by: jan.lentfer@web.de

treeviewx-0.5.1_7
A phylogenetic tree viewer
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: ORBit2-2.14.19, atk-2.6.0, bitstream-vera-1.10_5, cairo-1.10.2_5,2, compositeproto-0.4.2, cups-client-1.5.4_1, damageproto-1.2.1, dbus-1.6.8, dbus-glib-0.100.1, dconf-0.12.1_1, dri2proto-2.6, encodings-1.0.4,1, expat-2.0.1_2, fixesproto-5.0, font-bh-ttf-1.0.3, font-misc-ethiopic-1.0.3, font-misc-meltho-1.0.3, font-util-1.3.0, fontconfig-2.9.0,1, freetype2-2.4.11, gamin-0.1.10_5, gconf2-2.32.0_3, gdk-pixbuf2-2.26.5_3, gettext-0.18.1.1_1, gio-fam-backend-2.34.3, glib-2.34.3, gmake-3.82_1, gnome_subr-1.0, gnomehier-3.0, gobject-introspection-1.34.2, gstreamer-0.10.36, gstreamer-plugins-0.10.36_3,3, gtk-2.24.17, gtk-update-icon-cache-2.24.17, hicolor-icon-theme-0.12, inputproto-2.0.2, jasper-1.900.1_10, jbigkit-1.6, jpeg-8_4, kbproto-1.0.5, libGL-7.6.1_3, libGLU-7.6.1_2, libICE-1.0.7,1, libIDL-0.8.14_1, libSM-1.2.0,1, libX11-1.4.4,1, libXau-1.0.6, libXcomposite-0.4.3,1, libXcursor-1.1.12, libXdamage-1.1.3, libXdmcp-1.1.0, libXext-1.3.0_1,1, libXfixes-5.0, libXft-2.3.1, libXi-1.4.5,1, libXinerama-1.1.1,1, libXrandr-1.3.2, libXrender-0.9.6, libXt-1.1.1,1, libXv-1.0.6,1, libXxf86vm-1.1.1, libdrm-2.4.17_1, libffi-3.0.13, libfontenc-1.1.0, libiconv-1.14_1, libmspack-0.3, libpciaccess-0.12.1, libpthread-stubs-0.3_3, libxcb-1.7, libxml2-2.8.0_1, mkfontdir-1.0.7, mkfontscale-1.1.0, orc-0.4.16_1, pango-1.30.1, pciids-20130327, pcre-8.32, perl-5.14.2_3, pixman-0.24.2, pkgconf-0.9.1_2, png-1.5.14, polkit-0.105_1, python27-2.7.3_6, randrproto-1.3.2, renderproto-0.11.1, shared-mime-info-1.0_2, tiff-4.0.3, videoproto-2.3.1, wxgtk2-2.8.12_1, wxgtk2-common-2.8.12_1, wxgtk2-contrib-2.8.12_1, wxgtk2-contrib-common-2.8.12_1, xcb-util-0.3.9_1,1, xcb-util-renderutil-0.3.8, xextproto-7.2.0, xf86vidmodeproto-2.3.1, xineramaproto-1.2.1, xorg-fonts-truetype-7.5.1, xproto-7.0.22

ugene-1.11.4
Free, open-source, cross-platform bioinformatics toolkit
Long description | Sources | Main Web Site
Maintained by: h2+fbsdports@fsfe.org
Requires: atk-2.6.0, bash-4.2.42, bitstream-vera-1.10_5, ca_root_nss-3.14.3, cairo-1.10.2_5,2, compositeproto-0.4.2, damageproto-1.2.1, dri2proto-2.6, encodings-1.0.4,1, expat-2.0.1_2, fixesproto-5.0, font-bh-ttf-1.0.3, font-misc-ethiopic-1.0.3, font-misc-meltho-1.0.3, font-util-1.3.0, fontcacheproto-0.1.3, fontconfig-2.9.0,1, freetype2-2.4.11, gamin-0.1.10_5, gdk-pixbuf2-2.26.5_3, gettext-0.18.1.1_1, gio-fam-backend-2.34.3, glib-2.34.3, gnomehier-3.0, gobject-introspection-1.34.2, gstreamer-0.10.36, gstreamer-plugins-0.10.36_3,3, gtk-update-icon-cache-2.24.17, hicolor-icon-theme-0.12, icu-50.1.2, inputproto-2.0.2, jasper-1.900.1_10, jbigkit-1.6, jpeg-8_4, kbproto-1.0.5, lcms-1.19_1,1, libGL-7.6.1_3, libGLU-7.6.1_2, libICE-1.0.7,1, libSM-1.2.0,1, libX11-1.4.4,1, libXau-1.0.6, libXcomposite-0.4.3,1, libXcursor-1.1.12, libXdamage-1.1.3, libXdmcp-1.1.0, libXext-1.3.0_1,1, libXfixes-5.0, libXfontcache-1.0.5, libXft-2.3.1, libXi-1.4.5,1, libXinerama-1.1.1,1, libXmu-1.1.0,1, libXrandr-1.3.2, libXrender-0.9.6, libXt-1.1.1,1, libXtst-1.2.0, libXv-1.0.6,1, libXxf86vm-1.1.1, libdrm-2.4.17_1, libexecinfo-1.1_3, libffi-3.0.13, libfontenc-1.1.0, libiconv-1.14_1, libmng-1.0.10_2, libpciaccess-0.12.1, libpthread-stubs-0.3_3, libxcb-1.7, libxml2-2.8.0_1, mkfontdir-1.0.7, mkfontscale-1.1.0, orc-0.4.16_1, pango-1.30.1, pciids-20130327, pcre-8.32, perl-5.14.2_3, pixman-0.24.2, pkgconf-0.9.1_2, png-1.5.14, python27-2.7.3_6, qt4-assistant-4.8.4, qt4-clucene-4.8.4, qt4-corelib-4.8.4_1, qt4-declarative-4.8.4, qt4-doc-4.8.4, qt4-gui-4.8.4, qt4-help-4.8.4, qt4-imageformats-4.8.4, qt4-linguist-4.8.4, qt4-moc-4.8.4, qt4-network-4.8.4, qt4-opengl-4.8.4, qt4-qmake-4.8.4, qt4-qtestlib-4.8.4, qt4-rcc-4.8.4, qt4-script-4.8.4, qt4-sql-4.8.4, qt4-sqlite-plugin-4.8.4, qt4-svg-4.8.4, qt4-uic-4.8.4, qt4-webkit-4.8.4_1, qt4-xml-4.8.4, qt4-xmlpatterns-4.8.4, randrproto-1.3.2, recordproto-1.14.1, renderproto-0.11.1, shared-mime-info-1.0_2, sqlite3-3.7.14.1, tiff-4.0.3, videoproto-2.3.1, xcb-util-0.3.9_1,1, xcb-util-renderutil-0.3.8, xdg-utils-1.0.2_8, xextproto-7.2.0, xf86vidmodeproto-2.3.1, xineramaproto-1.2.1, xorg-fonts-truetype-7.5.1, xprop-1.2.1, xproto-7.0.22, xset-1.2.2_1

velvet-1.1.04
Sequence assembler for very short reads
Long description | Sources | Main Web Site
Maintained by: mzaki@m.u-tokyo.ac.jp
Requires: gettext-0.18.1.1_1, gmake-3.82_1, libiconv-1.14_1, perl-5.14.2_3, python27-2.7.3_6

wise-2.4.1
Intelligent algorithms for DNA searches
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: gamin-0.1.10_5, gettext-0.18.1.1_1, gio-fam-backend-2.34.3, glib-2.34.3, libffi-3.0.13, libiconv-1.14_1, pcre-8.32, perl-5.14.2_3, python27-2.7.3_6

wu-blast-2.0_20060322
WU BLAST, a software package for sequence similarity searches
Long description | Sources | Main Web Site
Maintained by: wen@FreeBSD.org

xdrawchem-1.9.9_11
Chemical drawing program
Long description | Sources | Main Web Site
Maintained by: hemi@puresimplicity.net
Requires: cups-client-1.5.4_1, damageproto-1.2.1, dri2proto-2.6, expat-2.0.1_2, fixesproto-5.0, fontconfig-2.9.0,1, freetype2-2.4.11, gettext-0.18.1.1_1, gmake-3.82_1, inputproto-2.0.2, jpeg-8_4, kbproto-1.0.5, lcms-1.19_1,1, libGL-7.6.1_3, libGLU-7.6.1_2, libICE-1.0.7,1, libSM-1.2.0,1, libX11-1.4.4,1, libXau-1.0.6, libXaw-1.0.9,2, libXdamage-1.1.3, libXdmcp-1.1.0, libXext-1.3.0_1,1, libXfixes-5.0, libXft-2.3.1, libXi-1.4.5,1, libXinerama-1.1.1,1, libXmu-1.1.0,1, libXp-1.0.1,1, libXpm-3.5.9, libXrender-0.9.6, libXt-1.1.1,1, libXxf86vm-1.1.1, libdrm-2.4.17_1, libiconv-1.14_1, libmng-1.0.10_2, libpciaccess-0.12.1, libpthread-stubs-0.3_3, libxcb-1.7, libxml2-2.8.0_1, nas-1.9.3, openbabel-2.3.2, pciids-20130327, pkgconf-0.9.1_2, png-1.5.14, printproto-1.0.5, python27-2.7.3_6, qt-3.3.8_14, renderproto-0.11.1, xextproto-7.2.0, xf86vidmodeproto-2.3.1, xineramaproto-1.2.1, xproto-7.0.22

xmolwt-0.7_5
Calculate atom weight and percent of each element for a given formula
Long description | Sources | Main Web Site
Maintained by: ports@FreeBSD.org
Requires: gettext-0.18.1.1_1, glib-1.2.10_13, gmake-3.82_1, gtk-1.2.10_22, inputproto-2.0.2, kbproto-1.0.5, libICE-1.0.7,1, libSM-1.2.0,1, libX11-1.4.4,1, libXau-1.0.6, libXdmcp-1.1.0, libXext-1.3.0_1,1, libXi-1.4.5,1, libiconv-1.14_1, libpthread-stubs-0.3_3, libxcb-1.7, pkgconf-0.9.1_2, xextproto-7.2.0, xproto-7.0.22

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