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FreeBSD Ports: Biology

ports の検索:

生物学に関連するソフトウェア。

FastTree-2.1.8
Approximately-maximum-likelihood phylogenetic trees from alignments
詳しい説明 | ソース | Main Web Site
保守担当者: bacon4000@gmail.com
必要なもの: binutils-2.25.1_2,1, gcc-4.8.5_2, gcc-ecj-4.5, gettext-runtime-0.19.7, gmp-5.1.3_3, indexinfo-0.2.4, mpc-1.0.3, mpfr-3.1.4

InsightToolkit-4.9.1
Insight Toolkit
詳しい説明 | ソース | Main Web Site
保守担当者: woodsb02@FreeBSD.org
必要なもの: binutils-2.25.1_2,1, ca_root_nss-3.22.2, cmake-3.5.2_1, cmake-modules-3.5.2, curl-7.48.0_2, expat-2.1.1, fftw-2.1.5_12, gcc-4.8.5_2, gcc-ecj-4.5, gdcm-2.6.3_1, gettext-runtime-0.19.7, gmp-5.1.3_3, hdf-szip-2.1_2, hdf5-1.10.0, indexinfo-0.2.4, jbigkit-2.1_1, jpeg-turbo-1.4.2, jsoncpp-1.7.2, lcms2-2.7_2, libarchive-3.2.0_1,1, libjpeg-turbo-1.4.2, liblz4-131, lzo2-2.09, mpc-1.0.3, mpfr-3.1.4, openjpeg15-1.5.2_1, png-1.6.21, tiff-4.0.6_1
ここにも含まれています: Science

afni-2015.11.13
Advanced Functional Neuro Imaging
詳しい説明 | ソース | Main Web Site
保守担当者: bacon4000@gmail.com
必要なもの: R-3.2.2_1, avahi-app-0.6.31_5, binutils-2.25.1_2,1, ca_root_nss-3.22.2, cairo-1.14.6,2, cups-2.1.3_2, curl-7.48.0_2, damageproto-1.2.1, dbus-1.8.20, dbus-glib-0.104, dejavu-2.35, dri2proto-2.8, encodings-1.0.4_3,1, endian-1.1, expat-2.1.1, f2c-20060810_4, fixesproto-5.0, font-bh-ttf-1.0.3_3, font-misc-ethiopic-1.0.3_3, font-misc-meltho-1.0.3_3, font-util-1.3.1, fontconfig-2.11.1_2,1, freetype2-2.6.3, gbm-11.1.2, gcc-4.8.5_2, gcc-ecj-4.5, gdbm-1.12, gettext-runtime-0.19.7, gettext-tools-0.19.7, ghostscript9-agpl-base-9.16_5, glib-2.46.2, glproto-1.4.17, gmake-4.1_2, gmp-5.1.3_3, gnome_subr-1.0, gnutls-3.4.11, gobject-introspection-1.46.0, graphite2-1.3.8, gsed-4.2.2, gsfonts-8.11_6, gsl-1.16_2, harfbuzz-1.2.3, hdf-szip-2.1_2, hdf5-1.10.0, icu-55.1, indexinfo-0.2.4, inputproto-2.3.1, jasper-1.900.1_16, jbig2dec-0.13, jbigkit-2.1_1, jpeg-turbo-1.4.2, kbproto-1.0.7, lcms2-2.7_2, libEGL-11.1.2, libGL-11.1.2, libGLU-9.0.0_2, libGLw-8.0.0_2, libICE-1.0.9_1,1, libSM-1.2.2_3,1, libX11-1.6.3,1, libXScrnSaver-1.2.2_3, libXau-1.0.8_3, libXaw-1.0.13,2, libXdamage-1.1.4_3, libXdmcp-1.1.2, libXext-1.3.3_1,1, libXfixes-5.0.1_3, libXft-2.3.2_1, libXi-1.7.6,1, libXmu-1.1.2_3,1, libXp-1.0.3,1, libXpm-3.5.11_4, libXrender-0.9.9, libXt-1.1.5,1, libXv-1.0.10_3,1, libXvMC-1.0.9, libXxf86vm-1.1.4_1, libdaemon-0.14_1, libdevq-0.0.2_1, libdrm-2.4.66,1, libedit-3.1.20150325_2, libffi-3.2.1, libfontenc-1.1.3, libglapi-11.1.2, libiconv-1.14_9, libidn-1.31, libpaper-1.1.24.4, libpciaccess-0.13.4, libpthread-stubs-0.3_6, libtasn1-4.8, libxcb-1.11.1, libxml2-2.9.3, libxshmfence-1.2, llvm37-3.7.1_2, m4-1.4.17_1,1, mkfontdir-1.0.7, mkfontscale-1.1.2, mpc-1.0.3, mpeg_encode-1.5b, mpfr-3.1.4, netcdf-4.4.0_2, netcdf-fortran-4.4.4, netpbm-10.35.98, nettle-3.2, open-motif-2.3.5, p11-kit-0.23.2, pango-1.38.0, pciids-20160430, pcre-8.38_1, perl5-5.20.3_13, pixman-0.34.0, pkgconf-0.9.12_1, png-1.6.21, printproto-1.0.5, python2-2_3, python27-2.7.11_2, qhull5-1.0_3, renderproto-0.11.1, scrnsaverproto-1.2.2, svgalib-1.4.3_7, tcl86-8.6.5_1, tiff-4.0.6_1, tk86-8.6.5, tpm-emulator-0.7.4_1, trousers-0.3.13, videoproto-2.3.2, xbitmaps-1.1.1, xcb-util-0.4.0_1,1, xcb-util-renderutil-0.3.9_1, xextproto-7.3.0, xf86vidmodeproto-2.3.1, xorg-fonts-truetype-7.7_1, xproto-7.0.28
ここにも含まれています: Science, Graphics

ariadne-1.3
Programs to compare protein sequences and profiles
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org
必要なもの: gettext-runtime-0.19.7, gmake-4.1_2, indexinfo-0.2.4

artemis-9_1
DNA sequence viewer and annotation tool
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org
必要なもの: alsa-lib-1.1.1_1, dejavu-2.35, expat-2.1.1, fixesproto-5.0, fontconfig-2.11.1_2,1, freetype2-2.6.3, giflib-5.1.3, inputproto-2.3.1, java-zoneinfo-2016.d, javavmwrapper-2.5, kbproto-1.0.7, libICE-1.0.9_1,1, libSM-1.2.2_3,1, libX11-1.6.3,1, libXau-1.0.8_3, libXdmcp-1.1.2, libXext-1.3.3_1,1, libXfixes-5.0.1_3, libXi-1.7.6,1, libXrender-0.9.9, libXt-1.1.5,1, libXtst-1.2.2_3, libfontenc-1.1.3, libpthread-stubs-0.3_6, libxcb-1.11.1, libxml2-2.9.3, mkfontdir-1.0.7, mkfontscale-1.1.2, openjdk8-8.92.14, recordproto-1.14.2, renderproto-0.11.1, xextproto-7.3.0, xproto-7.0.28
ここにも含まれています: Java

avida-2.12.4
Auto-adaptive genetic system designed for ALife research
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org
必要なもの: ca_root_nss-3.22.2, cmake-3.5.2_1, cmake-modules-3.5.2, curl-7.48.0_2, expat-2.1.1, jsoncpp-1.7.2, libarchive-3.2.0_1,1, liblz4-131, lzo2-2.09

babel-1.6_4
様々な分子ファイルのフォーマット間で変換をおこなうプログラム
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org
ここにも含まれています: Converters

bcftools-1.3
Tools for manipulating next-generation sequencing data
詳しい説明 | ソース | Main Web Site
保守担当者: cartwright@asu.edu
必要なもの: ca_root_nss-3.22.2, curl-7.48.0_2, gettext-runtime-0.19.7, gmake-4.1_2, gsl-1.16_2, htslib-1.3, indexinfo-0.2.4

bedtools-2.25.0
Toolset for genome arithmetic
詳しい説明 | ソース | Main Web Site
保守担当者: scottcheloha@gmail.com
必要なもの: gettext-runtime-0.19.7, gmake-4.1_2, indexinfo-0.2.4, libffi-3.2.1, python27-2.7.11_2

biococoa-2.2.2_2
Bioinformatics framework
詳しい説明 | ソース | Main Web Site
保守担当者: theraven@FreeBSD.org
必要なもの: avahi-app-0.6.31_5, ca_root_nss-3.22.2, cairo-1.14.6,2, cups-2.1.3_2, damageproto-1.2.1, dbus-1.8.20, dbus-glib-0.104, dri2proto-2.8, expat-2.1.1, fixesproto-5.0, flac-1.3.1_1, fontconfig-2.11.1_2,1, freetype2-2.6.3, gbm-11.1.2, gdbm-1.12, gettext-runtime-0.19.7, giflib-5.1.3, glib-2.46.2, glproto-1.4.17, gmake-4.1_2, gmp-5.1.3_3, gnome_subr-1.0, gnustep-back-0.24.1, gnustep-base-1.24.8_2, gnustep-gui-0.24.1_3, gnustep-make-2.6.7_2, gnutls-3.4.11, gobject-introspection-1.46.0, icu-55.1, indexinfo-0.2.4, jbigkit-2.1_1, jpeg-turbo-1.4.2, kbproto-1.0.7, libEGL-11.1.2, libGL-11.1.2, libGLU-9.0.0_2, libICE-1.0.9_1,1, libSM-1.2.2_3,1, libX11-1.6.3,1, libXau-1.0.8_3, libXcursor-1.1.14_3, libXdamage-1.1.4_3, libXdmcp-1.1.2, libXext-1.3.3_1,1, libXfixes-5.0.1_3, libXft-2.3.2_1, libXmu-1.1.2_3,1, libXrender-0.9.9, libXt-1.1.5,1, libXv-1.0.10_3,1, libXvMC-1.0.9, libXxf86vm-1.1.4_1, libao-1.2.0_2, libdaemon-0.14_1, libdevq-0.0.2_1, libdrm-2.4.66,1, libedit-3.1.20150325_2, libffi-3.2.1, libgcrypt-1.7.0, libglapi-11.1.2, libgpg-error-1.22, libiconv-1.14_9, libidn-1.31, libobjc2-1.8.1, libogg-1.3.2_1,4, libpaper-1.1.24.4, libpciaccess-0.13.4, libpthread-stubs-0.3_6, libsndfile-1.0.26, libtasn1-4.8, libvorbis-1.3.5,3, libxcb-1.11.1, libxml2-2.9.3, libxshmfence-1.2, libxslt-1.1.28_8, llvm37-3.7.1_2, nettle-3.2, p11-kit-0.23.2, pciids-20160430, pcre-8.38_1, perl5-5.20.3_13, pixman-0.34.0, png-1.6.21, python2-2_3, python27-2.7.11_2, renderproto-0.11.1, tiff-4.0.6_1, tpm-emulator-0.7.4_1, trousers-0.3.13, videoproto-2.3.2, xcb-util-0.4.0_1,1, xcb-util-renderutil-0.3.9_1, xextproto-7.3.0, xf86vidmodeproto-2.3.1, xproto-7.0.28
ここにも含まれています: Gnustep

biojava-1.7
生物学のデータ処理のためのオープンソース java ツール
詳しい説明 | ソース | Main Web Site
保守担当者: wenheping@gmail.com
必要なもの: alsa-lib-1.1.1_1, apache-ant-1.9.4, dejavu-2.35, expat-2.1.1, fixesproto-5.0, fontconfig-2.11.1_2,1, freetype2-2.6.3, giflib-5.1.3, inputproto-2.3.1, java-zoneinfo-2016.d, javavmwrapper-2.5, kbproto-1.0.7, libICE-1.0.9_1,1, libSM-1.2.2_3,1, libX11-1.6.3,1, libXau-1.0.8_3, libXdmcp-1.1.2, libXext-1.3.3_1,1, libXfixes-5.0.1_3, libXi-1.7.6,1, libXrender-0.9.9, libXt-1.1.5,1, libXtst-1.2.2_3, libfontenc-1.1.3, libpthread-stubs-0.3_6, libxcb-1.11.1, libxml2-2.9.3, mkfontdir-1.0.7, mkfontscale-1.1.2, openjdk8-8.92.14, recordproto-1.14.2, renderproto-0.11.1, xextproto-7.3.0, xproto-7.0.28
ここにも含まれています: Java

blat-36
Fast tool for local sequence similarity searches
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org
必要なもの: gettext-runtime-0.19.7, gmake-4.1_2, indexinfo-0.2.4, libedit-3.1.20150325_2, mysql56-client-5.6.30, png-1.6.21

bowtie-1.1.2
Ultrafast, memory-efficient short read aligner
詳しい説明 | ソース | Main Web Site
保守担当者: bacon4000@gmail.com
必要なもの: binutils-2.25.1_2,1, gcc-4.8.5_2, gcc-ecj-4.5, gettext-runtime-0.19.7, gmake-4.1_2, gmp-5.1.3_3, indexinfo-0.2.4, mpc-1.0.3, mpfr-3.1.4, perl5-5.20.3_13

bowtie2-2.2.8
Ultrafast, memory-efficient short read aligner
詳しい説明 | ソース | Main Web Site
保守担当者: bacon4000@gmail.com
必要なもの: gettext-runtime-0.19.7, gmake-4.1_2, indexinfo-0.2.4, perl5-5.20.3_13

bwa-0.7.9a
Burrows-Wheeler sequence aligner
詳しい説明 | ソース | Main Web Site
保守担当者: bacon4000@gmail.com
必要なもの: perl5-5.20.3_13

cd-hit-4.6.4
Clustering and comparing protein or nucleotide sequences
詳しい説明 | ソース | Main Web Site
保守担当者: bacon4000@gmail.com
必要なもの: binutils-2.25.1_2,1, gcc-4.8.5_2, gcc-ecj-4.5, gettext-runtime-0.19.7, gmake-4.1_2, gmp-5.1.3_3, indexinfo-0.2.4, mpc-1.0.3, mpfr-3.1.4

cdbfasta-2010.07.22
Fast indexing and retrieval of FASTA records from flat file databases
詳しい説明 | ソース | Main Web Site
保守担当者: bacon4000@gmail.com
必要なもの: gettext-runtime-0.19.7, gmake-4.1_2, indexinfo-0.2.4

chemeq-1.50_2
化学反応の LaTeX のコードを出力する
詳しい説明 | ソース
保守担当者: ports@FreeBSD.org
必要なもの: bison-2.7.1,1, gettext-runtime-0.19.7, indexinfo-0.2.4, m4-1.4.17_1,1
ここにも含まれています: Textproc

clustalw-2.1_1
多重配列整列プログラム CLUSTAL W
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org

consed-27.0
Graphical tool for editing Phrap assemblies
詳しい説明 | ソース | Main Web Site
保守担当者: mzaki@m.u-tokyo.ac.jp
必要なもの: linux-c6-expat-2.0.1_2, linux-c6-fontconfig-2.8.0_1, linux-c6-xorg-libs-7.4_4, linux_base-c6-6.7_2, perl5-5.20.3_13, phrap-1.090518, phred-0.020425.c

crux-1.2.0_5
Software toolkit for phylogenetic inference
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org
必要なもの: binutils-2.25.1_2,1, gcc-4.8.5_2, gcc-ecj-4.5, gettext-runtime-0.19.7, gmake-4.1_2, gmp-5.1.3_3, indexinfo-0.2.4, libffi-3.2.1, mpc-1.0.3, mpfr-3.1.4, python27-2.7.11_2
ここにも含まれています: Python

cycle-0.3.1_9
Calendar program for women
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org
必要なもの: ORBit2-2.14.19_1, atk-2.18.0, avahi-app-0.6.31_5, ca_root_nss-3.22.2, cairo-1.14.6,2, cantarell-fonts-0.0.24, compositeproto-0.4.2, cups-2.1.3_2, curl-7.48.0_2, damageproto-1.2.1, dbus-1.8.20, dbus-glib-0.104, dconf-0.24.0_1, dejavu-2.35, dri2proto-2.8, enchant-1.6.0_5, encodings-1.0.4_3,1, expat-2.1.1, fixesproto-5.0, font-bh-ttf-1.0.3_3, font-misc-ethiopic-1.0.3_3, font-misc-meltho-1.0.3_3, font-util-1.3.1, fontconfig-2.11.1_2,1, freetype2-2.6.3, gbm-11.1.2, gconf2-3.2.6_4, gdbm-1.12, gdk-pixbuf2-2.32.3, geoclue-2.3.0, gettext-runtime-0.19.7, giflib-5.1.3, glib-2.46.2, glib-networking-2.46.1_1, glproto-1.4.17, gmp-5.1.3_3, gnome_subr-1.0, gnutls-3.4.11, gobject-introspection-1.46.0, graphite2-1.3.8, gsettings-desktop-schemas-3.18.1, gstreamer-0.10.36_4, gstreamer-plugins-0.10.36_6,3, gstreamer1-1.8.0, gstreamer1-plugins-1.8.0, gtk-update-icon-cache-2.24.29, gtk2-2.24.29_2, harfbuzz-1.2.3, hicolor-icon-theme-0.15, hunspell-1.3.3, icu-55.1, indexinfo-0.2.4, inputproto-2.3.1, iso-codes-3.65, jasper-1.900.1_16, jbigkit-2.1_1, jpeg-turbo-1.4.2, json-glib-1.1.2, kbproto-1.0.7, libEGL-11.1.2, libGL-11.1.2, libGLU-9.0.0_2, libICE-1.0.9_1,1, libIDL-0.8.14_2, libSM-1.2.2_3,1, libX11-1.6.3,1, libXau-1.0.8_3, libXcomposite-0.4.4_3,1, libXcursor-1.1.14_3, libXdamage-1.1.4_3, libXdmcp-1.1.2, libXext-1.3.3_1,1, libXfixes-5.0.1_3, libXft-2.3.2_1, libXi-1.7.6,1, libXinerama-1.1.3_3,1, libXrandr-1.5.0, libXrender-0.9.9, libXt-1.1.5,1, libXv-1.0.10_3,1, libXvMC-1.0.9, libXxf86vm-1.1.4_1, libdaemon-0.14_1, libdevq-0.0.2_1, libdrm-2.4.66,1, libedit-3.1.20150325_2, libffi-3.2.1, libfontenc-1.1.3, libgcrypt-1.7.0, libglapi-11.1.2, libgpg-error-1.22, libiconv-1.14_9, libidn-1.31, libmspack-0.5, libpaper-1.1.24.4, libpciaccess-0.13.4, libproxy-0.4.12, libpthread-stubs-0.3_6, libsecret-0.18.4, libsoup-2.52.2, libtasn1-4.8, libxcb-1.11.1, libxml2-2.9.3, libxshmfence-1.2, libxslt-1.1.28_8, llvm37-3.7.1_2, mkfontdir-1.0.7, mkfontscale-1.1.2, nettle-3.2, nspr-4.12, orc-0.4.25, p11-kit-0.23.2, pango-1.38.0, pciids-20160430, pcre-8.38_1, perl5-5.20.3_13, pixman-0.34.0, png-1.6.21, polkit-0.113_1, py27-setuptools27-20.0, py27-wxPython-common-3.0.2.0_1, py27-wxPython30-3.0.2.0, python-2.7_2,2, python2-2_3, python27-2.7.11_2, randrproto-1.5.0, renderproto-0.11.1, shared-mime-info-1.5, spidermonkey170-17.0.0_1, sqlite3-3.12.2, tiff-4.0.6_1, tpm-emulator-0.7.4_1, trousers-0.3.13, videoproto-2.3.2, webkit-gtk2-2.4.11, webp-0.5.0, wx30-gtk2-3.0.2_4, xcb-util-0.4.0_1,1, xcb-util-renderutil-0.3.9_1, xextproto-7.3.0, xf86vidmodeproto-2.3.1, xineramaproto-1.2.1, xorg-fonts-truetype-7.7_1, xproto-7.0.28
ここにも含まれています: Deskutils, Python

diamond-0.7.12_1
BLAST-compatible local sequence aligner
詳しい説明 | ソース | Main Web Site
保守担当者: jrm@ftfl.ca
必要なもの: boost-libs-1.55.0_10, ca_root_nss-3.22.2, cmake-3.5.2_1, cmake-modules-3.5.2, curl-7.48.0_2, expat-2.1.1, icu-55.1, jsoncpp-1.7.2, libarchive-3.2.0_1,1, liblz4-131, lzo2-2.09

emboss-6.6.0_2
遺伝配列解析のためのオープンソースツールコレクション
詳しい説明 | ソース | Main Web Site
保守担当者: wen@FreeBSD.org
必要なもの: clustalw-2.1_1, expat-2.1.1, fontconfig-2.11.1_2,1, freetype2-2.6.3, gettext-runtime-0.19.7, gmake-4.1_2, indexinfo-0.2.4, jbigkit-2.1_1, jpeg-turbo-1.4.2, kbproto-1.0.7, libICE-1.0.9_1,1, libSM-1.2.2_3,1, libX11-1.6.3,1, libXau-1.0.8_3, libXaw-1.0.13,2, libXdmcp-1.1.2, libXext-1.3.3_1,1, libXft-2.3.2_1, libXmu-1.1.2_3,1, libXp-1.0.3,1, libXpm-3.5.11_4, libXrender-0.9.9, libXt-1.1.5,1, libgd-2.1.0_7,1, libpthread-stubs-0.3_6, libxcb-1.11.1, libxml2-2.9.3, open-motif-2.3.5, png-1.6.21, primer3-2.3.6, printproto-1.0.5, renderproto-0.11.1, tiff-4.0.6_1, xbitmaps-1.1.1, xextproto-7.3.0, xproto-7.0.28

fasta-21.1.1
DNA, タンパク質データベース検索用のプログラム集
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org

fasta3-36.3.8
DNA, タンパク質データベース検索用のプログラム集, V 3
詳しい説明 | ソース | Main Web Site
保守担当者: wendell@bsd.com.br

fastdnaml-1.2.2_2
DNAML の高速版, 最尤法により系統樹を作成する
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org

fastool-0.1.4
Simple and quick FastQ and FastA tool for file reading and conversion
詳しい説明 | ソース | Main Web Site
保守担当者: bacon4000@gmail.com

fastx_toolkit-0.0.14
CLI tools for Short-Reads FASTA/FASTQ files preprocessing
詳しい説明 | ソース | Main Web Site
保守担当者: bacon4000@gmail.com
必要なもの: autoconf-2.69, autoconf-wrapper-20131203, automake-1.15_1, automake-wrapper-20131203, indexinfo-0.2.4, libgtextutils-0.7, libtool-2.4.6, m4-1.4.17_1,1, perl5-5.20.3_13, pkgconf-0.9.12_1

fluctuate-1.40
Program to fit population models
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org

garlic-1.6_1
Molecular viewer, editor, and visualization program
詳しい説明 | ソース | Main Web Site
保守担当者: maho@FreeBSD.org
必要なもの: gettext-runtime-0.19.7, gmake-4.1_2, indexinfo-0.2.4, kbproto-1.0.7, libX11-1.6.3,1, libXau-1.0.8_3, libXdmcp-1.1.2, libpthread-stubs-0.3_6, libxcb-1.11.1, libxml2-2.9.3, xproto-7.0.28

gff2ps-0.98d_2
Converts gff-formated genomic data-sets to PostScript
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org
必要なもの: bash-4.3.42_1, gawk-4.1.3_2, gettext-runtime-0.19.7, indexinfo-0.2.4, libsigsegv-2.10_1

gmap-2015.09.21
Genomic Mapping and Alignment Program for mRNA and EST Sequences
詳しい説明 | ソース | Main Web Site
保守担当者: bacon4000@gmail.com
必要なもの: gettext-runtime-0.19.7, gmake-4.1_2, indexinfo-0.2.4, perl5-5.20.3_13

gperiodic-2.0.10_7
元素の周期表を表示する
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org
必要なもの: atk-2.18.0, avahi-app-0.6.31_5, ca_root_nss-3.22.2, cairo-1.14.6,2, compositeproto-0.4.2, cups-2.1.3_2, damageproto-1.2.1, dbus-1.8.20, dbus-glib-0.104, dejavu-2.35, dri2proto-2.8, encodings-1.0.4_3,1, expat-2.1.1, fixesproto-5.0, font-bh-ttf-1.0.3_3, font-misc-ethiopic-1.0.3_3, font-misc-meltho-1.0.3_3, font-util-1.3.1, fontconfig-2.11.1_2,1, freetype2-2.6.3, gbm-11.1.2, gdbm-1.12, gdk-pixbuf2-2.32.3, gettext-runtime-0.19.7, gettext-tools-0.19.7, glib-2.46.2, glproto-1.4.17, gmp-5.1.3_3, gnome_subr-1.0, gnutls-3.4.11, gobject-introspection-1.46.0, graphite2-1.3.8, gtk-update-icon-cache-2.24.29, gtk2-2.24.29_2, harfbuzz-1.2.3, hicolor-icon-theme-0.15, icu-55.1, indexinfo-0.2.4, inputproto-2.3.1, jasper-1.900.1_16, jbigkit-2.1_1, jpeg-turbo-1.4.2, kbproto-1.0.7, libEGL-11.1.2, libGL-11.1.2, libICE-1.0.9_1,1, libSM-1.2.2_3,1, libX11-1.6.3,1, libXau-1.0.8_3, libXcomposite-0.4.4_3,1, libXcursor-1.1.14_3, libXdamage-1.1.4_3, libXdmcp-1.1.2, libXext-1.3.3_1,1, libXfixes-5.0.1_3, libXft-2.3.2_1, libXi-1.7.6,1, libXinerama-1.1.3_3,1, libXrandr-1.5.0, libXrender-0.9.9, libXt-1.1.5,1, libXv-1.0.10_3,1, libXvMC-1.0.9, libXxf86vm-1.1.4_1, libdaemon-0.14_1, libdevq-0.0.2_1, libdrm-2.4.66,1, libedit-3.1.20150325_2, libffi-3.2.1, libfontenc-1.1.3, libglapi-11.1.2, libiconv-1.14_9, libidn-1.31, libpaper-1.1.24.4, libpciaccess-0.13.4, libpthread-stubs-0.3_6, libtasn1-4.8, libxcb-1.11.1, libxml2-2.9.3, libxshmfence-1.2, llvm37-3.7.1_2, mkfontdir-1.0.7, mkfontscale-1.1.2, nettle-3.2, p11-kit-0.23.2, pango-1.38.0, pciids-20160430, pcre-8.38_1, perl5-5.20.3_13, pixman-0.34.0, pkgconf-0.9.12_1, png-1.6.21, python-2.7_2,2, python2-2_3, python27-2.7.11_2, randrproto-1.5.0, renderproto-0.11.1, shared-mime-info-1.5, tiff-4.0.6_1, tpm-emulator-0.7.4_1, trousers-0.3.13, videoproto-2.3.2, xcb-util-0.4.0_1,1, xcb-util-renderutil-0.3.9_1, xextproto-7.3.0, xf86vidmodeproto-2.3.1, xineramaproto-1.2.1, xorg-fonts-truetype-7.7_1, xproto-7.0.28

grappa-2.0
Genome Rearrangements Analysis and Phylogeny Software
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org
必要なもの: gettext-runtime-0.19.7, gmake-4.1_2, indexinfo-0.2.4

hmmer-3.0_1
生物学的時系列解析のための隠れマルコフモデルを求める
詳しい説明 | ソース | Main Web Site
保守担当者: bacon4000@gmail.com
必要なもの: perl5-5.20.3_13

htslib-1.3
C library for high-throughput sequencing data formats
詳しい説明 | ソース | Main Web Site
保守担当者: cartwright@asu.edu
必要なもの: autoconf-2.69, autoconf-wrapper-20131203, automake-1.15_1, automake-wrapper-20131203, ca_root_nss-3.22.2, curl-7.48.0_2, gettext-runtime-0.19.7, gmake-4.1_2, indexinfo-0.2.4, m4-1.4.17_1,1, perl5-5.20.3_13
ここにも含まれています: Devel

io_lib-1.14.8
General purpose trace file (and Experiment File) reading interface
詳しい説明 | ソース | Main Web Site
保守担当者: danilo@FreeBSD.org
必要なもの: ca_root_nss-3.22.2, curl-7.48.0_2, gettext-runtime-0.19.7, gmake-4.1_2, indexinfo-0.2.4

jalview-2.07_2
Viewer and editor for multiple sequence alignments
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org
必要なもの: alsa-lib-1.1.1_1, apache-ant-1.9.4, dejavu-2.35, expat-2.1.1, fixesproto-5.0, fontconfig-2.11.1_2,1, freetype2-2.6.3, giflib-5.1.3, inputproto-2.3.1, java-zoneinfo-2016.d, javavmwrapper-2.5, kbproto-1.0.7, libICE-1.0.9_1,1, libSM-1.2.2_3,1, libX11-1.6.3,1, libXau-1.0.8_3, libXdmcp-1.1.2, libXext-1.3.3_1,1, libXfixes-5.0.1_3, libXi-1.7.6,1, libXrender-0.9.9, libXt-1.1.5,1, libXtst-1.2.2_3, libfontenc-1.1.3, libpthread-stubs-0.3_6, libxcb-1.11.1, libxml2-2.9.3, mkfontdir-1.0.7, mkfontscale-1.1.2, openjdk8-8.92.14, recordproto-1.14.2, renderproto-0.11.1, xextproto-7.3.0, xproto-7.0.28
ここにも含まれています: Java

jellyfish-2.2.4
Fast, memory-efficient counting of k-mers in DNA
詳しい説明 | ソース | Main Web Site
保守担当者: bacon4000@gmail.com
必要なもの: autoconf-2.69, autoconf-wrapper-20131203, automake-1.15_1, automake-wrapper-20131203, gettext-runtime-0.19.7, gmake-4.1_2, indexinfo-0.2.4, libedit-3.1.20150325_2, libffi-3.2.1, libtool-2.4.6, libyaml-0.1.6_2, m4-1.4.17_1,1, perl5-5.20.3_13, pkgconf-0.9.12_1, ruby-2.2.5,1, yaggo-1.5.9

lagan-2.0_1
Efficient tools for large-scale multiple alignments of genomic DNA
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org
必要なもの: perl5-5.20.3_13

lamarc-2.1.8_1
Package of programs for computing population parameters
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org

libgtextutils-0.7
Gordon's text utilities
詳しい説明 | ソース | Main Web Site
保守担当者: bacon4000@gmail.com
必要なもの: autoconf-2.69, autoconf-wrapper-20131203, automake-1.15_1, automake-wrapper-20131203, indexinfo-0.2.4, libtool-2.4.6, m4-1.4.17_1,1, perl5-5.20.3_13, pkgconf-0.9.12_1

libsbml-5.13.0
API Library for Working with SBML File
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org
必要なもの: ca_root_nss-3.22.2, cmake-3.5.2_1, cmake-modules-3.5.2, curl-7.48.0_2, expat-2.1.1, jsoncpp-1.7.2, libarchive-3.2.0_1,1, liblz4-131, libxml2-2.9.3, lzo2-2.09
ここにも含まれています: Devel

linux-foldingathome-5.04
Distributed client for Protein Folding
詳しい説明 | ソース | Main Web Site
保守担当者: onatan@gmail.com
必要なもの: linux_base-c6-6.7_2

mafft-7.266
Multiple alignment program for amino acid or nucleotide sequences
詳しい説明 | ソース | Main Web Site
保守担当者: cartwright@asu.edu
必要なもの: gettext-runtime-0.19.7, gmake-4.1_2, indexinfo-0.2.4

mapm3-3.0
Constructs linkage maps of markers segregating in experimental crosses
詳しい説明 | ソース | Main Web Site
保守担当者: tphilipp@potion-studios.com

migrate-3.6.11
Program to estimate population sizes and migration rates
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org

minc2-2.2.00_4
Medical Imaging NetCDF
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org
必要なもの: autoconf-2.69, autoconf-wrapper-20131203, automake-1.15_1, automake-wrapper-20131203, bash-4.3.42_1, bison-2.7.1,1, ca_root_nss-3.22.2, curl-7.48.0_2, gettext-runtime-0.19.7, gmake-4.1_2, hdf-szip-2.1_2, hdf5-1.10.0, indexinfo-0.2.4, libtool-2.4.6, m4-1.4.17_1,1, netcdf-4.4.0_2, perl5-5.20.3_13, pkgconf-0.9.12_1
ここにも含まれています: Science

molden-5.4_1
分子軌道と電子密度を 2D と 3D で表示する
詳しい説明 | ソース | Main Web Site
保守担当者: pi@FreeBSD.org
必要なもの: binutils-2.25.1_2,1, damageproto-1.2.1, dri2proto-2.8, expat-2.1.1, fixesproto-5.0, gcc-4.8.5_2, gcc-ecj-4.5, gettext-runtime-0.19.7, glproto-1.4.17, gmake-4.1_2, gmp-5.1.3_3, indexinfo-0.2.4, kbproto-1.0.7, libGL-11.1.2, libGLU-9.0.0_2, libX11-1.6.3,1, libXau-1.0.8_3, libXdamage-1.1.4_3, libXdmcp-1.1.2, libXext-1.3.3_1,1, libXfixes-5.0.1_3, libXv-1.0.10_3,1, libXvMC-1.0.9, libXxf86vm-1.1.4_1, libdevq-0.0.2_1, libdrm-2.4.66,1, libglapi-11.1.2, libpciaccess-0.13.4, libpthread-stubs-0.3_6, libxcb-1.11.1, libxml2-2.9.3, libxshmfence-1.2, mpc-1.0.3, mpfr-3.1.4, pciids-20160430, videoproto-2.3.2, xextproto-7.3.0, xf86vidmodeproto-2.3.1, xproto-7.0.28

mopac-7.1.15
半経験的分子軌道計算 (MNDO, etc.)
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org
必要なもの: binutils-2.25.1_2,1, gcc-4.8.5_2, gcc-ecj-4.5, gettext-runtime-0.19.7, gmake-4.1_2, gmp-5.1.3_3, indexinfo-0.2.4, mpc-1.0.3, mpfr-3.1.4

mrbayes-3.1.2_1
Bayesian inference of phylogeny
詳しい説明 | ソース | Main Web Site
保守担当者: mzaki@m.u-tokyo.ac.jp
必要なもの: gettext-runtime-0.19.7, gmake-4.1_2, indexinfo-0.2.4, readline-6.3.8

mummer-3.23_1
Modular system for rapid whole genome alignment
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org
必要なもの: gettext-runtime-0.19.7, gmake-4.1_2, indexinfo-0.2.4, perl5-5.20.3_13

muscle-3.8.31
MUltiple Sequence Comparison by Log-Expectation
詳しい説明 | ソース | Main Web Site
保守担当者: mzaki@m.u-tokyo.ac.jp

ncbi-blast-2.2.30_2
NCBI implementation of Basic Local Alignment Search Tool
詳しい説明 | ソース | Main Web Site
保守担当者: bacon4000@gmail.com
必要なもの: binutils-2.25.1_2,1, bzip2-1.0.6, gcc-4.8.5_2, gcc-ecj-4.5, gettext-runtime-0.19.7, gmake-4.1_2, gmp-5.1.3_3, indexinfo-0.2.4, libffi-3.2.1, mpc-1.0.3, mpfr-3.1.4, p5-Exporter-Tiny-0.042_1, p5-List-MoreUtils-0.413, pcre-8.38_1, perl5-5.20.3_13, python27-2.7.11_2

ncbi-toolkit-2012.06.20
National Center for Biotechnology Information (NCBI) の開発キット
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org
必要なもの: expat-2.1.1, fontconfig-2.11.1_2,1, freetype2-2.6.3, gettext-runtime-0.19.7, indexinfo-0.2.4, jpeg-turbo-1.4.2, kbproto-1.0.7, libICE-1.0.9_1,1, libSM-1.2.2_3,1, libX11-1.6.3,1, libXau-1.0.8_3, libXaw-1.0.13,2, libXdmcp-1.1.2, libXext-1.3.3_1,1, libXft-2.3.2_1, libXmu-1.1.2_3,1, libXp-1.0.3,1, libXpm-3.5.11_4, libXrender-0.9.9, libXt-1.1.5,1, libpthread-stubs-0.3_6, libxcb-1.11.1, libxml2-2.9.3, open-motif-2.3.5, png-1.6.21, printproto-1.0.5, renderproto-0.11.1, xbitmaps-1.1.1, xextproto-7.3.0, xproto-7.0.28

p5-AcePerl-1.92_4
ACEDB ゲノムデータベース用の perl インタフェイス
詳しい説明 | ソース | Main Web Site
保守担当者: perl@FreeBSD.org
必要なもの: p5-Cache-2.11, p5-Cache-Cache-1.08, p5-Digest-SHA1-2.13_1, p5-Error-0.17024, p5-File-NFSLock-1.21_1, p5-Heap-0.80_1, p5-IO-String-1.08_1, p5-IPC-ShareLite-0.17_1, p5-TimeDate-2.30_2,1, perl5-5.20.3_13
ここにも含まれています: Databases, Perl5

p5-Bio-ASN1-EntrezGene-1.70_1
Regular expression-based Perl Parser for NCBI Entrez Gene
詳しい説明 | ソース | Main Web Site
保守担当者: perl@FreeBSD.org
必要なもの: cairo-1.14.6,2, damageproto-1.2.1, dejavu-2.35, dri2proto-2.8, encodings-1.0.4_3,1, expat-2.1.1, fixesproto-5.0, font-bh-ttf-1.0.3_3, font-misc-ethiopic-1.0.3_3, font-misc-meltho-1.0.3_3, font-util-1.3.1, fontconfig-2.11.1_2,1, freetype2-2.6.3, gbm-11.1.2, gettext-runtime-0.19.7, glib-2.46.2, glproto-1.4.17, graphite2-1.3.8, graphviz-2.38.0_12, harfbuzz-1.2.3, icu-55.1, indexinfo-0.2.4, jbigkit-2.1_1, jpeg-turbo-1.4.2, kbproto-1.0.7, libEGL-11.1.2, libGL-11.1.2, libICE-1.0.9_1,1, libSM-1.2.2_3,1, libX11-1.6.3,1, libXau-1.0.8_3, libXaw-1.0.13,2, libXdamage-1.1.4_3, libXdmcp-1.1.2, libXext-1.3.3_1,1, libXfixes-5.0.1_3, libXft-2.3.2_1, libXmu-1.1.2_3,1, libXp-1.0.3,1, libXpm-3.5.11_4, libXrender-0.9.9, libXt-1.1.5,1, libXv-1.0.10_3,1, libXvMC-1.0.9, libXxf86vm-1.1.4_1, libdevq-0.0.2_1, libdrm-2.4.66,1, libedit-3.1.20150325_2, libffi-3.2.1, libfontenc-1.1.3, libgd-2.1.0_7,1, libglapi-11.1.2, libiconv-1.14_9, libltdl-2.4.6, libpciaccess-0.13.4, libpthread-stubs-0.3_6, libxcb-1.11.1, libxml2-2.9.3, libxshmfence-1.2, llvm37-3.7.1_2, mkfontdir-1.0.7, mkfontscale-1.1.2, mysql56-client-5.6.30, p5-Algorithm-Diff-1.1903, p5-Algorithm-Munkres-0.08_1, p5-Array-Compare-2.11_1, p5-Authen-NTLM-1.09_1, p5-Class-AutoClass-1.56_1, p5-Class-Data-Inheritable-0.08_1, p5-Class-Inspector-1.28_1, p5-Class-Method-Modifiers-2.12, p5-Clone-0.38, p5-Convert-BinHex-1.125, p5-Convert-Binary-C-0.78, p5-Crypt-RC4-2.02_1, p5-DBD-mysql-4.033, p5-DBI-1.636, p5-Data-OptList-0.110, p5-Data-Stag-0.14_2, p5-Devel-GlobalDestruction-0.13_1, p5-Devel-StackTrace-2.01, p5-Digest-HMAC-1.03_1, p5-Digest-Perl-MD5-1.9_1, p5-Encode-Locale-1.05, p5-Error-0.17024, p5-Exception-Class-1.40, p5-Exporter-Tiny-0.042_1, p5-File-Listing-6.04_1, p5-File-Slurp-Tiny-0.004, p5-File-Which-1.21, p5-GD-2.56_2, p5-GD-SVG-0.33_6, p5-Graph-0.96_2,1, p5-GraphViz-2.20, p5-HTML-Element-Extended-1.18_1, p5-HTML-Parser-3.72, p5-HTML-TableExtract-2.13, p5-HTML-Tagset-3.20_1, p5-HTML-Tree-5.03_1, p5-HTTP-Cookies-6.01_1, p5-HTTP-Daemon-6.01_1, p5-HTTP-Date-6.02_1, p5-HTTP-Message-6.11, p5-HTTP-Negotiate-6.01_1, p5-Hash-AutoHash-1.17_1, p5-Hash-AutoHash-Args-1.18_1, p5-Heap-0.80_1, p5-IO-HTML-1.001_1, p5-IO-SessionData-1.03_1, p5-IO-Socket-IP-0.37, p5-IO-Socket-SSL-2.025, p5-IO-String-1.08_1, p5-IO-Tty-1.12_1, p5-IO-stringy-2.111, p5-IPC-Run-0.94, p5-LWP-MediaTypes-6.02_1, p5-LWP-Protocol-https-6.06_1, p5-List-MoreUtils-0.413, p5-MIME-Tools-5.507,2, p5-Mail-Tools-2.14, p5-Math-Derivative-0.04, p5-Math-Random-0.72, p5-Math-Spline-0.02_1, p5-Module-Runtime-0.014_1, p5-Moo-2.001001_3, p5-Mozilla-CA-20160104, p5-Net-HTTP-6.09, p5-Net-SSLeay-1.74, p5-OLE-Storage_Lite-0.19_1, p5-Params-Util-1.07_2, p5-Parse-RecDescent-1.967.009_2, p5-PostScript-0.06_2, p5-Role-Tiny-2.000003, p5-SOAP-Lite-1.19, p5-SVG-2.64, p5-SVG-Graph-0.04_1, p5-Set-Scalar-1.26_1, p5-Socket-2.021, p5-Sort-Naturally-1.03_1, p5-Spreadsheet-ParseExcel-0.65_2,1, p5-Statistics-Descriptive-3.0609, p5-Sub-Exporter-0.987_1, p5-Sub-Exporter-Progressive-0.001011, p5-Sub-Install-0.928_1, p5-Sub-Uplevel-0.2500, p5-Task-Weaken-1.04_1, p5-Test-Deep-1.120, p5-Test-Differences-0.630,1, p5-Test-Exception-0.43, p5-Test-Most-0.34_1, p5-Test-Simple-1.001.014, p5-Test-Warn-0.30_2, p5-Text-Diff-1.41_1, p5-Text-Iconv-1.7_2, p5-Text-Shellwords-1.08_1, p5-Text-Tabs+Wrap-2013.0523_1, p5-Tie-IxHash-1.23_1, p5-Tie-ToObject-0.03_2, p5-TimeDate-2.30_2,1, p5-Tree-DAG_Node-1.29, p5-Type-Tiny-1.000005_1, p5-Type-Tiny-XS-0.012_1, p5-URI-1.71, p5-WWW-RobotRules-6.02_1, p5-XML-DOM-1.44_1, p5-XML-DOM-XPath-0.14_1, p5-XML-Filter-BufferText-1.01_1, p5-XML-LibXML-2.0124,1, p5-XML-NamespaceSupport-1.11_1, p5-XML-Parser-2.44, p5-XML-Parser-Lite-0.721, p5-XML-RegExp-0.04_1, p5-XML-SAX-0.99_2, p5-XML-SAX-Base-1.08_1, p5-XML-SAX-Expat-0.51_1, p5-XML-SAX-Writer-0.56, p5-XML-Simple-2.22, p5-XML-Twig-3.49, p5-XML-Writer-0.625_1, p5-XML-XPath-1.36, p5-XML-XPathEngine-0.14_1, p5-YAML-1.14, p5-bioperl-1.6.924_4, p5-libwww-6.15, p5-libxml-0.08_1, pango-1.38.0, pciids-20160430, pcre-8.38_1, perl5-5.20.3_13, pixman-0.34.0, png-1.6.21, printproto-1.0.5, python27-2.7.11_2, renderproto-0.11.1, tiff-4.0.6_1, videoproto-2.3.2, xcb-util-0.4.0_1,1, xcb-util-renderutil-0.3.9_1, xextproto-7.3.0, xf86vidmodeproto-2.3.1, xorg-fonts-truetype-7.7_1, xproto-7.0.28
ここにも含まれています: Perl5

p5-Bio-Das-1.17_3
Client-side library for Distributed Genome Annotation System
詳しい説明 | ソース | Main Web Site
保守担当者: perl@FreeBSD.org
必要なもの: cairo-1.14.6,2, damageproto-1.2.1, dejavu-2.35, dri2proto-2.8, encodings-1.0.4_3,1, expat-2.1.1, fixesproto-5.0, font-bh-ttf-1.0.3_3, font-misc-ethiopic-1.0.3_3, font-misc-meltho-1.0.3_3, font-util-1.3.1, fontconfig-2.11.1_2,1, freetype2-2.6.3, gbm-11.1.2, gettext-runtime-0.19.7, glib-2.46.2, glproto-1.4.17, graphite2-1.3.8, graphviz-2.38.0_12, harfbuzz-1.2.3, icu-55.1, indexinfo-0.2.4, jbigkit-2.1_1, jpeg-turbo-1.4.2, kbproto-1.0.7, libEGL-11.1.2, libGL-11.1.2, libICE-1.0.9_1,1, libSM-1.2.2_3,1, libX11-1.6.3,1, libXau-1.0.8_3, libXaw-1.0.13,2, libXdamage-1.1.4_3, libXdmcp-1.1.2, libXext-1.3.3_1,1, libXfixes-5.0.1_3, libXft-2.3.2_1, libXmu-1.1.2_3,1, libXp-1.0.3,1, libXpm-3.5.11_4, libXrender-0.9.9, libXt-1.1.5,1, libXv-1.0.10_3,1, libXvMC-1.0.9, libXxf86vm-1.1.4_1, libdevq-0.0.2_1, libdrm-2.4.66,1, libedit-3.1.20150325_2, libffi-3.2.1, libfontenc-1.1.3, libgd-2.1.0_7,1, libglapi-11.1.2, libiconv-1.14_9, libltdl-2.4.6, libpciaccess-0.13.4, libpthread-stubs-0.3_6, libxcb-1.11.1, libxml2-2.9.3, libxshmfence-1.2, llvm37-3.7.1_2, mkfontdir-1.0.7, mkfontscale-1.1.2, mysql56-client-5.6.30, p5-Algorithm-Diff-1.1903, p5-Algorithm-Munkres-0.08_1, p5-Array-Compare-2.11_1, p5-Authen-NTLM-1.09_1, p5-Class-AutoClass-1.56_1, p5-Class-Data-Inheritable-0.08_1, p5-Class-Inspector-1.28_1, p5-Class-Method-Modifiers-2.12, p5-Clone-0.38, p5-Convert-BinHex-1.125, p5-Convert-Binary-C-0.78, p5-Crypt-RC4-2.02_1, p5-DBD-mysql-4.033, p5-DBI-1.636, p5-Data-OptList-0.110, p5-Data-Stag-0.14_2, p5-Devel-GlobalDestruction-0.13_1, p5-Devel-StackTrace-2.01, p5-Digest-HMAC-1.03_1, p5-Digest-Perl-MD5-1.9_1, p5-Encode-Locale-1.05, p5-Error-0.17024, p5-Exception-Class-1.40, p5-Exporter-Tiny-0.042_1, p5-File-Listing-6.04_1, p5-File-Slurp-Tiny-0.004, p5-File-Which-1.21, p5-GD-2.56_2, p5-GD-SVG-0.33_6, p5-Graph-0.96_2,1, p5-GraphViz-2.20, p5-HTML-Element-Extended-1.18_1, p5-HTML-Parser-3.72, p5-HTML-TableExtract-2.13, p5-HTML-Tagset-3.20_1, p5-HTML-Tree-5.03_1, p5-HTTP-Cookies-6.01_1, p5-HTTP-Daemon-6.01_1, p5-HTTP-Date-6.02_1, p5-HTTP-Message-6.11, p5-HTTP-Negotiate-6.01_1, p5-Hash-AutoHash-1.17_1, p5-Hash-AutoHash-Args-1.18_1, p5-Heap-0.80_1, p5-IO-HTML-1.001_1, p5-IO-SessionData-1.03_1, p5-IO-Socket-IP-0.37, p5-IO-Socket-SSL-2.025, p5-IO-String-1.08_1, p5-IO-Tty-1.12_1, p5-IO-stringy-2.111, p5-IPC-Run-0.94, p5-LWP-MediaTypes-6.02_1, p5-LWP-Protocol-https-6.06_1, p5-List-MoreUtils-0.413, p5-MIME-Tools-5.507,2, p5-Mail-Tools-2.14, p5-Math-Derivative-0.04, p5-Math-Random-0.72, p5-Math-Spline-0.02_1, p5-Module-Runtime-0.014_1, p5-Moo-2.001001_3, p5-Mozilla-CA-20160104, p5-Net-HTTP-6.09, p5-Net-SSLeay-1.74, p5-OLE-Storage_Lite-0.19_1, p5-Params-Util-1.07_2, p5-Parse-RecDescent-1.967.009_2, p5-PostScript-0.06_2, p5-Role-Tiny-2.000003, p5-SOAP-Lite-1.19, p5-SVG-2.64, p5-SVG-Graph-0.04_1, p5-Set-Scalar-1.26_1, p5-Socket-2.021, p5-Sort-Naturally-1.03_1, p5-Spreadsheet-ParseExcel-0.65_2,1, p5-Statistics-Descriptive-3.0609, p5-Sub-Exporter-0.987_1, p5-Sub-Exporter-Progressive-0.001011, p5-Sub-Install-0.928_1, p5-Sub-Uplevel-0.2500, p5-Task-Weaken-1.04_1, p5-Test-Deep-1.120, p5-Test-Differences-0.630,1, p5-Test-Exception-0.43, p5-Test-Most-0.34_1, p5-Test-Simple-1.001.014, p5-Test-Warn-0.30_2, p5-Text-Diff-1.41_1, p5-Text-Iconv-1.7_2, p5-Text-Shellwords-1.08_1, p5-Text-Tabs+Wrap-2013.0523_1, p5-Tie-IxHash-1.23_1, p5-Tie-ToObject-0.03_2, p5-TimeDate-2.30_2,1, p5-Tree-DAG_Node-1.29, p5-Type-Tiny-1.000005_1, p5-Type-Tiny-XS-0.012_1, p5-URI-1.71, p5-WWW-RobotRules-6.02_1, p5-XML-DOM-1.44_1, p5-XML-DOM-XPath-0.14_1, p5-XML-Filter-BufferText-1.01_1, p5-XML-LibXML-2.0124,1, p5-XML-NamespaceSupport-1.11_1, p5-XML-Parser-2.44, p5-XML-Parser-Lite-0.721, p5-XML-RegExp-0.04_1, p5-XML-SAX-0.99_2, p5-XML-SAX-Base-1.08_1, p5-XML-SAX-Expat-0.51_1, p5-XML-SAX-Writer-0.56, p5-XML-Simple-2.22, p5-XML-Twig-3.49, p5-XML-Writer-0.625_1, p5-XML-XPath-1.36, p5-XML-XPathEngine-0.14_1, p5-YAML-1.14, p5-bioperl-1.6.924_4, p5-libwww-6.15, p5-libxml-0.08_1, pango-1.38.0, pciids-20160430, pcre-8.38_1, perl5-5.20.3_13, pixman-0.34.0, png-1.6.21, printproto-1.0.5, python27-2.7.11_2, renderproto-0.11.1, tiff-4.0.6_1, videoproto-2.3.2, xcb-util-0.4.0_1,1, xcb-util-renderutil-0.3.9_1, xextproto-7.3.0, xf86vidmodeproto-2.3.1, xorg-fonts-truetype-7.7_1, xproto-7.0.28
ここにも含まれています: Perl5

p5-Bio-Das-Lite-2.11_1
Perl extension for the DAS (HTTP+XML) Protocol
詳しい説明 | ソース | Main Web Site
保守担当者: perl@FreeBSD.org
必要なもの: ca_root_nss-3.22.2, curl-7.48.0_2, p5-Authen-NTLM-1.09_1, p5-CPAN-Meta-2.150005, p5-Digest-HMAC-1.03_1, p5-Encode-Locale-1.05, p5-File-Listing-6.04_1, p5-HTML-Parser-3.72, p5-HTML-Tagset-3.20_1, p5-HTTP-Cookies-6.01_1, p5-HTTP-Daemon-6.01_1, p5-HTTP-Date-6.02_1, p5-HTTP-Message-6.11, p5-HTTP-Negotiate-6.01_1, p5-IO-HTML-1.001_1, p5-IO-Socket-IP-0.37, p5-IO-Socket-SSL-2.025, p5-LWP-MediaTypes-6.02_1, p5-Module-Build-0.4218, p5-Mozilla-CA-20160104, p5-Net-HTTP-6.09, p5-Net-SSLeay-1.74, p5-Readonly-2.04, p5-Socket-2.021, p5-URI-1.71, p5-WWW-Curl-4.17_2, p5-WWW-RobotRules-6.02_1, p5-libwww-6.15, perl5-5.20.3_13
ここにも含まれています: Perl5

p5-Bio-GFF3-2.0_2
Fast low-level functions for parsing and formatting GFF3
詳しい説明 | ソース | Main Web Site
保守担当者: perl@FreeBSD.org
必要なもの: p5-Exporter-Tiny-0.042_1, p5-File-ReadBackwards-1.05_1, p5-List-MoreUtils-0.413, p5-URI-1.71, perl5-5.20.3_13
ここにも含まれています: Perl5

p5-Bio-Glite-0.10_2
Perl Interface to G-language
詳しい説明 | ソース | Main Web Site
保守担当者: perl@FreeBSD.org
必要なもの: p5-Authen-NTLM-1.09_1, p5-Digest-HMAC-1.03_1, p5-Encode-Locale-1.05, p5-File-Listing-6.04_1, p5-HTML-Parser-3.72, p5-HTML-Tagset-3.20_1, p5-HTTP-Cookies-6.01_1, p5-HTTP-Daemon-6.01_1, p5-HTTP-Date-6.02_1, p5-HTTP-Message-6.11, p5-HTTP-Negotiate-6.01_1, p5-IO-HTML-1.001_1, p5-IO-Socket-IP-0.37, p5-IO-Socket-SSL-2.025, p5-LWP-MediaTypes-6.02_1, p5-Mozilla-CA-20160104, p5-Net-HTTP-6.09, p5-Net-SSLeay-1.74, p5-Socket-2.021, p5-URI-1.71, p5-WWW-RobotRules-6.02_1, p5-libwww-6.15, perl5-5.20.3_13
ここにも含まれています: Perl5

p5-Bio-Graphics-2.39
Generate GD Images of Bio::Seq Objects
詳しい説明 | ソース | Main Web Site
保守担当者: perl@FreeBSD.org
必要なもの: ca_root_nss-3.22.2, cairo-1.14.6,2, curl-7.48.0_2, damageproto-1.2.1, dejavu-2.35, dri2proto-2.8, encodings-1.0.4_3,1, expat-2.1.1, fixesproto-5.0, font-bh-ttf-1.0.3_3, font-misc-ethiopic-1.0.3_3, font-misc-meltho-1.0.3_3, font-util-1.3.1, fontconfig-2.11.1_2,1, freetype2-2.6.3, gbm-11.1.2, gettext-runtime-0.19.7, glib-2.46.2, glproto-1.4.17, graphite2-1.3.8, graphviz-2.38.0_12, harfbuzz-1.2.3, icu-55.1, indexinfo-0.2.4, io_lib-1.14.8, jbigkit-2.1_1, jpeg-turbo-1.4.2, kbproto-1.0.7, libEGL-11.1.2, libGL-11.1.2, libICE-1.0.9_1,1, libSM-1.2.2_3,1, libX11-1.6.3,1, libXau-1.0.8_3, libXaw-1.0.13,2, libXdamage-1.1.4_3, libXdmcp-1.1.2, libXext-1.3.3_1,1, libXfixes-5.0.1_3, libXft-2.3.2_1, libXmu-1.1.2_3,1, libXp-1.0.3,1, libXpm-3.5.11_4, libXrender-0.9.9, libXt-1.1.5,1, libXv-1.0.10_3,1, libXvMC-1.0.9, libXxf86vm-1.1.4_1, libdevq-0.0.2_1, libdrm-2.4.66,1, libedit-3.1.20150325_2, libffi-3.2.1, libfontenc-1.1.3, libgd-2.1.0_7,1, libglapi-11.1.2, libiconv-1.14_9, libltdl-2.4.6, libpciaccess-0.13.4, libpthread-stubs-0.3_6, libxcb-1.11.1, libxml2-2.9.3, libxshmfence-1.2, llvm37-3.7.1_2, mkfontdir-1.0.7, mkfontscale-1.1.2, mysql56-client-5.6.30, p5-Algorithm-Diff-1.1903, p5-Algorithm-Munkres-0.08_1, p5-Array-Compare-2.11_1, p5-Authen-NTLM-1.09_1, p5-Bio-SCF-1.03_1, p5-CPAN-Meta-2.150005, p5-Class-AutoClass-1.56_1, p5-Class-Data-Inheritable-0.08_1, p5-Class-Inspector-1.28_1, p5-Class-Method-Modifiers-2.12, p5-Clone-0.38, p5-Convert-BinHex-1.125, p5-Convert-Binary-C-0.78, p5-Crypt-RC4-2.02_1, p5-DBD-mysql-4.033, p5-DBI-1.636, p5-Data-OptList-0.110, p5-Data-Stag-0.14_2, p5-Devel-GlobalDestruction-0.13_1, p5-Devel-StackTrace-2.01, p5-Digest-HMAC-1.03_1, p5-Digest-Perl-MD5-1.9_1, p5-Encode-Locale-1.05, p5-Error-0.17024, p5-Exception-Class-1.40, p5-Exporter-Tiny-0.042_1, p5-File-Listing-6.04_1, p5-File-Slurp-Tiny-0.004, p5-File-Which-1.21, p5-GD-2.56_2, p5-GD-SVG-0.33_6, p5-Graph-0.96_2,1, p5-GraphViz-2.20, p5-HTML-Element-Extended-1.18_1, p5-HTML-Parser-3.72, p5-HTML-TableExtract-2.13, p5-HTML-Tagset-3.20_1, p5-HTML-Tree-5.03_1, p5-HTTP-Cookies-6.01_1, p5-HTTP-Daemon-6.01_1, p5-HTTP-Date-6.02_1, p5-HTTP-Message-6.11, p5-HTTP-Negotiate-6.01_1, p5-Hash-AutoHash-1.17_1, p5-Hash-AutoHash-Args-1.18_1, p5-Heap-0.80_1, p5-IO-HTML-1.001_1, p5-IO-SessionData-1.03_1, p5-IO-Socket-IP-0.37, p5-IO-Socket-SSL-2.025, p5-IO-String-1.08_1, p5-IO-Tty-1.12_1, p5-IO-stringy-2.111, p5-IPC-Run-0.94, p5-LWP-MediaTypes-6.02_1, p5-LWP-Protocol-https-6.06_1, p5-List-MoreUtils-0.413, p5-MIME-Tools-5.507,2, p5-Mail-Tools-2.14, p5-Math-Derivative-0.04, p5-Math-Random-0.72, p5-Math-Spline-0.02_1, p5-Module-Build-0.4218, p5-Module-Runtime-0.014_1, p5-Moo-2.001001_3, p5-Mozilla-CA-20160104, p5-Net-HTTP-6.09, p5-Net-SSLeay-1.74, p5-OLE-Storage_Lite-0.19_1, p5-Params-Util-1.07_2, p5-Parse-RecDescent-1.967.009_2, p5-PostScript-0.06_2, p5-Role-Tiny-2.000003, p5-SOAP-Lite-1.19, p5-SVG-2.64, p5-SVG-Graph-0.04_1, p5-Set-Scalar-1.26_1, p5-Socket-2.021, p5-Sort-Naturally-1.03_1, p5-Spreadsheet-ParseExcel-0.65_2,1, p5-Statistics-Descriptive-3.0609, p5-Sub-Exporter-0.987_1, p5-Sub-Exporter-Progressive-0.001011, p5-Sub-Install-0.928_1, p5-Sub-Uplevel-0.2500, p5-Task-Weaken-1.04_1, p5-Test-Deep-1.120, p5-Test-Differences-0.630,1, p5-Test-Exception-0.43, p5-Test-Most-0.34_1, p5-Test-Simple-1.001.014, p5-Test-Warn-0.30_2, p5-Text-Diff-1.41_1, p5-Text-Iconv-1.7_2, p5-Text-Shellwords-1.08_1, p5-Text-Tabs+Wrap-2013.0523_1, p5-Tie-IxHash-1.23_1, p5-Tie-ToObject-0.03_2, p5-TimeDate-2.30_2,1, p5-Tree-DAG_Node-1.29, p5-Type-Tiny-1.000005_1, p5-Type-Tiny-XS-0.012_1, p5-URI-1.71, p5-WWW-RobotRules-6.02_1, p5-XML-DOM-1.44_1, p5-XML-DOM-XPath-0.14_1, p5-XML-Filter-BufferText-1.01_1, p5-XML-LibXML-2.0124,1, p5-XML-NamespaceSupport-1.11_1, p5-XML-Parser-2.44, p5-XML-Parser-Lite-0.721, p5-XML-RegExp-0.04_1, p5-XML-SAX-0.99_2, p5-XML-SAX-Base-1.08_1, p5-XML-SAX-Expat-0.51_1, p5-XML-SAX-Writer-0.56, p5-XML-Simple-2.22, p5-XML-Twig-3.49, p5-XML-Writer-0.625_1, p5-XML-XPath-1.36, p5-XML-XPathEngine-0.14_1, p5-YAML-1.14, p5-bioperl-1.6.924_4, p5-libwww-6.15, p5-libxml-0.08_1, pango-1.38.0, pciids-20160430, pcre-8.38_1, perl5-5.20.3_13, pixman-0.34.0, png-1.6.21, printproto-1.0.5, python27-2.7.11_2, renderproto-0.11.1, tiff-4.0.6_1, videoproto-2.3.2, xcb-util-0.4.0_1,1, xcb-util-renderutil-0.3.9_1, xextproto-7.3.0, xf86vidmodeproto-2.3.1, xorg-fonts-truetype-7.7_1, xproto-7.0.28
ここにも含まれています: Perl5

p5-Bio-MAGETAB-1.31_1
Data model and utility API for the MAGE-TAB format
詳しい説明 | ソース | Main Web Site
保守担当者: perl@FreeBSD.org
必要なもの: p5-Algorithm-C3-0.10_1, p5-B-Hooks-EndOfScope-0.20, p5-Carp-Clan-6.04_1, p5-Class-C3-0.31, p5-Class-Load-0.22, p5-Class-Load-XS-0.09_1, p5-Class-Singleton-1.5_1, p5-Data-OptList-0.110, p5-Date-Manip-6.53, p5-DateTime-1.27, p5-DateTime-Format-DateManip-0.04_1, p5-DateTime-Locale-1.03, p5-DateTime-TimeZone-1.97, p5-Devel-GlobalDestruction-0.13_1, p5-Devel-OverloadInfo-0.004, p5-Devel-StackTrace-2.01, p5-Digest-HMAC-1.03_1, p5-Dist-CheckConflicts-0.11_1, p5-Email-Valid-1.192_1, p5-Eval-Closure-0.13, p5-Exporter-Tiny-0.042_1, p5-IO-Socket-IP-0.37, p5-List-AllUtils-0.10, p5-List-MoreUtils-0.413, p5-List-SomeUtils-0.52, p5-List-SomeUtils-XS-0.52, p5-MRO-Compat-0.12_1, p5-Mail-Tools-2.14, p5-Module-Implementation-0.09_1, p5-Module-Runtime-0.014_1, p5-Module-Runtime-Conflicts-0.002, p5-Moose-2.1801_1,1, p5-MooseX-FollowPBP-0.05_1, p5-MooseX-Types-0.46, p5-Net-DNS-1.05_1,1, p5-Net-Domain-TLD-1.74, p5-Package-DeprecationManager-0.15, p5-Package-Stash-0.37_1, p5-Package-Stash-XS-0.28_1, p5-Params-Coerce-0.14_2, p5-Params-Util-1.07_2, p5-Params-Validate-1.24, p5-Parse-RecDescent-1.967.009_2, p5-Scalar-List-Utils-1.45,1, p5-Socket-2.021, p5-Sub-Exporter-0.987_1, p5-Sub-Exporter-ForMethods-0.100052, p5-Sub-Exporter-Progressive-0.001011, p5-Sub-Identify-0.12, p5-Sub-Install-0.928_1, p5-Sub-Name-0.14,1, p5-Text-CSV_XS-1.18, p5-TimeDate-2.30_2,1, p5-Try-Tiny-0.24, p5-URI-1.71, p5-Variable-Magic-0.59, p5-namespace-autoclean-0.28, p5-namespace-clean-0.26, perl5-5.20.3_13
ここにも含まれています: Perl5

p5-Bio-NEXUS-0.78_1
Object-oriented Perl API for the NEXUS file format
詳しい説明 | ソース | Main Web Site
保守担当者: perl@FreeBSD.org
必要なもの: p5-Clone-PP-1.06_1, perl5-5.20.3_13
ここにも含まれています: Perl5

p5-Bio-Phylo-0.58
Phylogenetic analysis using Perl
詳しい説明 | ソース | Main Web Site
保守担当者: perl@FreeBSD.org
必要なもの: cairo-1.14.6,2, damageproto-1.2.1, dejavu-2.35, dri2proto-2.8, encodings-1.0.4_3,1, expat-2.1.1, fixesproto-5.0, font-bh-ttf-1.0.3_3, font-misc-ethiopic-1.0.3_3, font-misc-meltho-1.0.3_3, font-util-1.3.1, fontconfig-2.11.1_2,1, freetype2-2.6.3, gbm-11.1.2, gettext-runtime-0.19.7, glib-2.46.2, glproto-1.4.17, graphite2-1.3.8, graphviz-2.38.0_12, harfbuzz-1.2.3, icu-55.1, indexinfo-0.2.4, jbigkit-2.1_1, jpeg-turbo-1.4.2, kbproto-1.0.7, libEGL-11.1.2, libGL-11.1.2, libICE-1.0.9_1,1, libSM-1.2.2_3,1, libX11-1.6.3,1, libXau-1.0.8_3, libXaw-1.0.13,2, libXdamage-1.1.4_3, libXdmcp-1.1.2, libXext-1.3.3_1,1, libXfixes-5.0.1_3, libXft-2.3.2_1, libXmu-1.1.2_3,1, libXp-1.0.3,1, libXpm-3.5.11_4, libXrender-0.9.9, libXt-1.1.5,1, libXv-1.0.10_3,1, libXvMC-1.0.9, libXxf86vm-1.1.4_1, libdevq-0.0.2_1, libdrm-2.4.66,1, libedit-3.1.20150325_2, libffi-3.2.1, libfontenc-1.1.3, libgd-2.1.0_7,1, libglapi-11.1.2, libiconv-1.14_9, libltdl-2.4.6, libpciaccess-0.13.4, libpthread-stubs-0.3_6, libxcb-1.11.1, libxml2-2.9.3, libxshmfence-1.2, llvm37-3.7.1_2, mkfontdir-1.0.7, mkfontscale-1.1.2, mysql56-client-5.6.30, p5-Algorithm-Diff-1.1903, p5-Algorithm-Munkres-0.08_1, p5-Array-Compare-2.11_1, p5-Authen-NTLM-1.09_1, p5-Class-AutoClass-1.56_1, p5-Class-Data-Inheritable-0.08_1, p5-Class-Inspector-1.28_1, p5-Class-Method-Modifiers-2.12, p5-Clone-0.38, p5-Convert-BinHex-1.125, p5-Convert-Binary-C-0.78, p5-Crypt-RC4-2.02_1, p5-DBD-mysql-4.033, p5-DBI-1.636, p5-Data-OptList-0.110, p5-Data-Stag-0.14_2, p5-Data-TemporaryBag-0.09_1, p5-Devel-GlobalDestruction-0.13_1, p5-Devel-StackTrace-2.01, p5-Digest-HMAC-1.03_1, p5-Digest-Perl-MD5-1.9_1, p5-Encode-Locale-1.05, p5-Error-0.17024, p5-Exception-Class-1.40, p5-Exporter-Tiny-0.042_1, p5-File-Listing-6.04_1, p5-File-Slurp-Tiny-0.004, p5-File-Which-1.21, p5-Font-TTF-1.05, p5-GD-2.56_2, p5-GD-SVG-0.33_6, p5-Graph-0.96_2,1, p5-GraphViz-2.20, p5-HTML-Element-Extended-1.18_1, p5-HTML-Parser-3.72, p5-HTML-TableExtract-2.13, p5-HTML-Tagset-3.20_1, p5-HTML-Tree-5.03_1, p5-HTTP-Cookies-6.01_1, p5-HTTP-Daemon-6.01_1, p5-HTTP-Date-6.02_1, p5-HTTP-Message-6.11, p5-HTTP-Negotiate-6.01_1, p5-Hash-AutoHash-1.17_1, p5-Hash-AutoHash-Args-1.18_1, p5-Heap-0.80_1, p5-IO-HTML-1.001_1, p5-IO-SessionData-1.03_1, p5-IO-Socket-IP-0.37, p5-IO-Socket-SSL-2.025, p5-IO-String-1.08_1, p5-IO-Tty-1.12_1, p5-IO-stringy-2.111, p5-IPC-Run-0.94, p5-LWP-MediaTypes-6.02_1, p5-LWP-Protocol-https-6.06_1, p5-List-MoreUtils-0.413, p5-MIME-Tools-5.507,2, p5-Mail-Tools-2.14, p5-Math-Bezier-Convert-0.02_1, p5-Math-CDF-0.1_2, p5-Math-Derivative-0.04, p5-Math-Random-0.72, p5-Math-Spline-0.02_1, p5-Module-Runtime-0.014_1, p5-Moo-2.001001_3, p5-Mozilla-CA-20160104, p5-Net-HTTP-6.09, p5-Net-SSLeay-1.74, p5-OLE-Storage_Lite-0.19_1, p5-PDF-API2-2.027, p5-Params-Util-1.07_2, p5-Parse-RecDescent-1.967.009_2, p5-PostScript-0.06_2, p5-Role-Tiny-2.000003, p5-SOAP-Lite-1.19, p5-SVG-2.64, p5-SVG-Graph-0.04_1, p5-SWF-Builder-0.16_2, p5-SWF-File-0.42_2,1, p5-Set-Scalar-1.26_1, p5-Socket-2.021, p5-Sort-Naturally-1.03_1, p5-Spreadsheet-ParseExcel-0.65_2,1, p5-Statistics-Descriptive-3.0609, p5-Sub-Exporter-0.987_1, p5-Sub-Exporter-Progressive-0.001011, p5-Sub-Install-0.928_1, p5-Sub-Uplevel-0.2500, p5-Task-Weaken-1.04_1, p5-Test-Deep-1.120, p5-Test-Differences-0.630,1, p5-Test-Exception-0.43, p5-Test-Most-0.34_1, p5-Test-Simple-1.001.014, p5-Test-Warn-0.30_2, p5-Text-Diff-1.41_1, p5-Text-Iconv-1.7_2, p5-Text-Shellwords-1.08_1, p5-Text-Tabs+Wrap-2013.0523_1, p5-Tie-IxHash-1.23_1, p5-Tie-ToObject-0.03_2, p5-TimeDate-2.30_2,1, p5-Tree-DAG_Node-1.29, p5-Type-Tiny-1.000005_1, p5-Type-Tiny-XS-0.012_1, p5-URI-1.71, p5-WWW-RobotRules-6.02_1, p5-XML-DOM-1.44_1, p5-XML-DOM-XPath-0.14_1, p5-XML-Filter-BufferText-1.01_1, p5-XML-LibXML-2.0124,1, p5-XML-NamespaceSupport-1.11_1, p5-XML-Parser-2.44, p5-XML-Parser-Lite-0.721, p5-XML-RegExp-0.04_1, p5-XML-SAX-0.99_2, p5-XML-SAX-Base-1.08_1, p5-XML-SAX-Expat-0.51_1, p5-XML-SAX-Writer-0.56, p5-XML-Simple-2.22, p5-XML-Twig-3.49, p5-XML-Writer-0.625_1, p5-XML-XML2JSON-0.06_1, p5-XML-XPath-1.36, p5-XML-XPathEngine-0.14_1, p5-YAML-1.14, p5-YAML-Syck-1.27_1, p5-bioperl-1.6.924_4, p5-libwww-6.15, p5-libxml-0.08_1, pango-1.38.0, pciids-20160430, pcre-8.38_1, perl5-5.20.3_13, pixman-0.34.0, png-1.6.21, printproto-1.0.5, python27-2.7.11_2, renderproto-0.11.1, tiff-4.0.6_1, videoproto-2.3.2, xcb-util-0.4.0_1,1, xcb-util-renderutil-0.3.9_1, xextproto-7.3.0, xf86vidmodeproto-2.3.1, xorg-fonts-truetype-7.7_1, xproto-7.0.28
ここにも含まれています: Perl5

p5-Bio-SCF-1.03_1
Read and Update SCF Chromatographic Sequence Files
詳しい説明 | ソース | Main Web Site
保守担当者: wen@FreeBSD.org
必要なもの: ca_root_nss-3.22.2, curl-7.48.0_2, io_lib-1.14.8, perl5-5.20.3_13
ここにも含まれています: Perl5

p5-bioperl-1.6.924_4
生物情報学用の perl モジュールコレクション
詳しい説明 | ソース | Main Web Site
保守担当者: perl@FreeBSD.org
必要なもの: cairo-1.14.6,2, damageproto-1.2.1, dejavu-2.35, dri2proto-2.8, encodings-1.0.4_3,1, expat-2.1.1, fixesproto-5.0, font-bh-ttf-1.0.3_3, font-misc-ethiopic-1.0.3_3, font-misc-meltho-1.0.3_3, font-util-1.3.1, fontconfig-2.11.1_2,1, freetype2-2.6.3, gbm-11.1.2, gettext-runtime-0.19.7, glib-2.46.2, glproto-1.4.17, graphite2-1.3.8, graphviz-2.38.0_12, harfbuzz-1.2.3, icu-55.1, indexinfo-0.2.4, jbigkit-2.1_1, jpeg-turbo-1.4.2, kbproto-1.0.7, libEGL-11.1.2, libGL-11.1.2, libICE-1.0.9_1,1, libSM-1.2.2_3,1, libX11-1.6.3,1, libXau-1.0.8_3, libXaw-1.0.13,2, libXdamage-1.1.4_3, libXdmcp-1.1.2, libXext-1.3.3_1,1, libXfixes-5.0.1_3, libXft-2.3.2_1, libXmu-1.1.2_3,1, libXp-1.0.3,1, libXpm-3.5.11_4, libXrender-0.9.9, libXt-1.1.5,1, libXv-1.0.10_3,1, libXvMC-1.0.9, libXxf86vm-1.1.4_1, libdevq-0.0.2_1, libdrm-2.4.66,1, libedit-3.1.20150325_2, libffi-3.2.1, libfontenc-1.1.3, libgd-2.1.0_7,1, libglapi-11.1.2, libiconv-1.14_9, libltdl-2.4.6, libpciaccess-0.13.4, libpthread-stubs-0.3_6, libxcb-1.11.1, libxml2-2.9.3, libxshmfence-1.2, llvm37-3.7.1_2, mkfontdir-1.0.7, mkfontscale-1.1.2, mysql56-client-5.6.30, p5-Algorithm-Diff-1.1903, p5-Algorithm-Munkres-0.08_1, p5-Array-Compare-2.11_1, p5-Authen-NTLM-1.09_1, p5-CPAN-Meta-2.150005, p5-Class-AutoClass-1.56_1, p5-Class-Data-Inheritable-0.08_1, p5-Class-Inspector-1.28_1, p5-Class-Method-Modifiers-2.12, p5-Clone-0.38, p5-Convert-BinHex-1.125, p5-Convert-Binary-C-0.78, p5-Crypt-RC4-2.02_1, p5-DBD-mysql-4.033, p5-DBI-1.636, p5-Data-OptList-0.110, p5-Data-Stag-0.14_2, p5-Devel-GlobalDestruction-0.13_1, p5-Devel-StackTrace-2.01, p5-Digest-HMAC-1.03_1, p5-Digest-Perl-MD5-1.9_1, p5-Encode-Locale-1.05, p5-Error-0.17024, p5-Exception-Class-1.40, p5-Exporter-Tiny-0.042_1, p5-File-Listing-6.04_1, p5-File-Slurp-Tiny-0.004, p5-File-Which-1.21, p5-GD-2.56_2, p5-GD-SVG-0.33_6, p5-Graph-0.96_2,1, p5-GraphViz-2.20, p5-HTML-Element-Extended-1.18_1, p5-HTML-Parser-3.72, p5-HTML-TableExtract-2.13, p5-HTML-Tagset-3.20_1, p5-HTML-Tree-5.03_1, p5-HTTP-Cookies-6.01_1, p5-HTTP-Daemon-6.01_1, p5-HTTP-Date-6.02_1, p5-HTTP-Message-6.11, p5-HTTP-Negotiate-6.01_1, p5-Hash-AutoHash-1.17_1, p5-Hash-AutoHash-Args-1.18_1, p5-Heap-0.80_1, p5-IO-HTML-1.001_1, p5-IO-SessionData-1.03_1, p5-IO-Socket-IP-0.37, p5-IO-Socket-SSL-2.025, p5-IO-String-1.08_1, p5-IO-Tty-1.12_1, p5-IO-stringy-2.111, p5-IPC-Run-0.94, p5-LWP-MediaTypes-6.02_1, p5-LWP-Protocol-https-6.06_1, p5-List-MoreUtils-0.413, p5-MIME-Tools-5.507,2, p5-Mail-Tools-2.14, p5-Math-Derivative-0.04, p5-Math-Random-0.72, p5-Math-Spline-0.02_1, p5-Module-Build-0.4218, p5-Module-Runtime-0.014_1, p5-Moo-2.001001_3, p5-Mozilla-CA-20160104, p5-Net-HTTP-6.09, p5-Net-SSLeay-1.74, p5-OLE-Storage_Lite-0.19_1, p5-Params-Util-1.07_2, p5-Parse-RecDescent-1.967.009_2, p5-PostScript-0.06_2, p5-Role-Tiny-2.000003, p5-SOAP-Lite-1.19, p5-SVG-2.64, p5-SVG-Graph-0.04_1, p5-Set-Scalar-1.26_1, p5-Socket-2.021, p5-Sort-Naturally-1.03_1, p5-Spreadsheet-ParseExcel-0.65_2,1, p5-Statistics-Descriptive-3.0609, p5-Sub-Exporter-0.987_1, p5-Sub-Exporter-Progressive-0.001011, p5-Sub-Install-0.928_1, p5-Sub-Uplevel-0.2500, p5-Task-Weaken-1.04_1, p5-Test-Deep-1.120, p5-Test-Differences-0.630,1, p5-Test-Exception-0.43, p5-Test-Most-0.34_1, p5-Test-Simple-1.001.014, p5-Test-Warn-0.30_2, p5-Text-Diff-1.41_1, p5-Text-Iconv-1.7_2, p5-Text-Shellwords-1.08_1, p5-Text-Tabs+Wrap-2013.0523_1, p5-Tie-IxHash-1.23_1, p5-Tie-ToObject-0.03_2, p5-TimeDate-2.30_2,1, p5-Tree-DAG_Node-1.29, p5-Type-Tiny-1.000005_1, p5-Type-Tiny-XS-0.012_1, p5-URI-1.71, p5-WWW-RobotRules-6.02_1, p5-XML-DOM-1.44_1, p5-XML-DOM-XPath-0.14_1, p5-XML-Filter-BufferText-1.01_1, p5-XML-LibXML-2.0124,1, p5-XML-NamespaceSupport-1.11_1, p5-XML-Parser-2.44, p5-XML-Parser-Lite-0.721, p5-XML-RegExp-0.04_1, p5-XML-SAX-0.99_2, p5-XML-SAX-Base-1.08_1, p5-XML-SAX-Expat-0.51_1, p5-XML-SAX-Writer-0.56, p5-XML-Simple-2.22, p5-XML-Twig-3.49, p5-XML-Writer-0.625_1, p5-XML-XPath-1.36, p5-XML-XPathEngine-0.14_1, p5-YAML-1.14, p5-libwww-6.15, p5-libxml-0.08_1, pango-1.38.0, pciids-20160430, pcre-8.38_1, perl5-5.20.3_13, pixman-0.34.0, png-1.6.21, printproto-1.0.5, python27-2.7.11_2, renderproto-0.11.1, tiff-4.0.6_1, videoproto-2.3.2, xcb-util-0.4.0_1,1, xcb-util-renderutil-0.3.9_1, xextproto-7.3.0, xf86vidmodeproto-2.3.1, xorg-fonts-truetype-7.7_1, xproto-7.0.28
ここにも含まれています: Perl5

p5-bioperl-run-1.6.901_1
Wrapper modules for common bioinformatics tools
詳しい説明 | ソース | Main Web Site
保守担当者: perl@FreeBSD.org
必要なもの: cairo-1.14.6,2, damageproto-1.2.1, dejavu-2.35, dri2proto-2.8, encodings-1.0.4_3,1, expat-2.1.1, fixesproto-5.0, font-bh-ttf-1.0.3_3, font-misc-ethiopic-1.0.3_3, font-misc-meltho-1.0.3_3, font-util-1.3.1, fontconfig-2.11.1_2,1, freetype2-2.6.3, gbm-11.1.2, gettext-runtime-0.19.7, glib-2.46.2, glproto-1.4.17, graphite2-1.3.8, graphviz-2.38.0_12, harfbuzz-1.2.3, icu-55.1, indexinfo-0.2.4, jbigkit-2.1_1, jpeg-turbo-1.4.2, kbproto-1.0.7, libEGL-11.1.2, libGL-11.1.2, libICE-1.0.9_1,1, libSM-1.2.2_3,1, libX11-1.6.3,1, libXau-1.0.8_3, libXaw-1.0.13,2, libXdamage-1.1.4_3, libXdmcp-1.1.2, libXext-1.3.3_1,1, libXfixes-5.0.1_3, libXft-2.3.2_1, libXmu-1.1.2_3,1, libXp-1.0.3,1, libXpm-3.5.11_4, libXrender-0.9.9, libXt-1.1.5,1, libXv-1.0.10_3,1, libXvMC-1.0.9, libXxf86vm-1.1.4_1, libdevq-0.0.2_1, libdrm-2.4.66,1, libedit-3.1.20150325_2, libffi-3.2.1, libfontenc-1.1.3, libgd-2.1.0_7,1, libglapi-11.1.2, libiconv-1.14_9, libltdl-2.4.6, libpciaccess-0.13.4, libpthread-stubs-0.3_6, libxcb-1.11.1, libxml2-2.9.3, libxshmfence-1.2, llvm37-3.7.1_2, mkfontdir-1.0.7, mkfontscale-1.1.2, mysql56-client-5.6.30, p5-Algorithm-Diff-1.1903, p5-Algorithm-Munkres-0.08_1, p5-Array-Compare-2.11_1, p5-Authen-NTLM-1.09_1, p5-CPAN-Meta-2.150005, p5-Class-AutoClass-1.56_1, p5-Class-Data-Inheritable-0.08_1, p5-Class-Inspector-1.28_1, p5-Class-Method-Modifiers-2.12, p5-Clone-0.38, p5-Config-Any-0.27, p5-Config-General-2.60, p5-Config-Tiny-2.23, p5-Convert-BinHex-1.125, p5-Convert-Binary-C-0.78, p5-Crypt-RC4-2.02_1, p5-DBD-mysql-4.033, p5-DBI-1.636, p5-Data-OptList-0.110, p5-Data-Stag-0.14_2, p5-Devel-GlobalDestruction-0.13_1, p5-Devel-StackTrace-2.01, p5-Digest-HMAC-1.03_1, p5-Digest-Perl-MD5-1.9_1, p5-Encode-Locale-1.05, p5-Error-0.17024, p5-Exception-Class-1.40, p5-Exporter-Tiny-0.042_1, p5-File-Listing-6.04_1, p5-File-Slurp-Tiny-0.004, p5-File-Sort-1.01_1, p5-File-Which-1.21, p5-GD-2.56_2, p5-GD-SVG-0.33_6, p5-Graph-0.96_2,1, p5-GraphViz-2.20, p5-HTML-Element-Extended-1.18_1, p5-HTML-Parser-3.72, p5-HTML-TableExtract-2.13, p5-HTML-Tagset-3.20_1, p5-HTML-Tree-5.03_1, p5-HTTP-Cookies-6.01_1, p5-HTTP-Daemon-6.01_1, p5-HTTP-Date-6.02_1, p5-HTTP-Message-6.11, p5-HTTP-Negotiate-6.01_1, p5-Hash-AutoHash-1.17_1, p5-Hash-AutoHash-Args-1.18_1, p5-Heap-0.80_1, p5-IO-HTML-1.001_1, p5-IO-SessionData-1.03_1, p5-IO-Socket-IP-0.37, p5-IO-Socket-SSL-2.025, p5-IO-String-1.08_1, p5-IO-Tty-1.12_1, p5-IO-stringy-2.111, p5-IPC-Run-0.94, p5-JSON-XS-3.02, p5-LWP-MediaTypes-6.02_1, p5-LWP-Protocol-https-6.06_1, p5-List-MoreUtils-0.413, p5-MIME-Tools-5.507,2, p5-Mail-Tools-2.14, p5-Math-Derivative-0.04, p5-Math-Random-0.72, p5-Math-Spline-0.02_1, p5-Module-Build-0.4218, p5-Module-Pluggable-5.2, p5-Module-Runtime-0.014_1, p5-Moo-2.001001_3, p5-Mozilla-CA-20160104, p5-Net-HTTP-6.09, p5-Net-SSLeay-1.74, p5-OLE-Storage_Lite-0.19_1, p5-Params-Util-1.07_2, p5-Parse-RecDescent-1.967.009_2, p5-PostScript-0.06_2, p5-Role-Tiny-2.000003, p5-SOAP-Lite-1.19, p5-SVG-2.64, p5-SVG-Graph-0.04_1, p5-Set-Scalar-1.26_1, p5-Socket-2.021, p5-Sort-Naturally-1.03_1, p5-Spreadsheet-ParseExcel-0.65_2,1, p5-Statistics-Descriptive-3.0609, p5-Sub-Exporter-0.987_1, p5-Sub-Exporter-Progressive-0.001011, p5-Sub-Install-0.928_1, p5-Sub-Uplevel-0.2500, p5-Task-Weaken-1.04_1, p5-Test-Deep-1.120, p5-Test-Differences-0.630,1, p5-Test-Exception-0.43, p5-Test-Most-0.34_1, p5-Test-Simple-1.001.014, p5-Test-Warn-0.30_2, p5-Text-Diff-1.41_1, p5-Text-Iconv-1.7_2, p5-Text-Shellwords-1.08_1, p5-Text-Tabs+Wrap-2013.0523_1, p5-Tie-IxHash-1.23_1, p5-Tie-ToObject-0.03_2, p5-TimeDate-2.30_2,1, p5-Tree-DAG_Node-1.29, p5-Type-Tiny-1.000005_1, p5-Type-Tiny-XS-0.012_1, p5-Types-Serialiser-1.0_1, p5-URI-1.71, p5-WWW-RobotRules-6.02_1, p5-XML-DOM-1.44_1, p5-XML-DOM-XPath-0.14_1, p5-XML-Filter-BufferText-1.01_1, p5-XML-LibXML-2.0124,1, p5-XML-NamespaceSupport-1.11_1, p5-XML-Parser-2.44, p5-XML-Parser-Lite-0.721, p5-XML-RegExp-0.04_1, p5-XML-SAX-0.99_2, p5-XML-SAX-Base-1.08_1, p5-XML-SAX-Expat-0.51_1, p5-XML-SAX-Writer-0.56, p5-XML-Simple-2.22, p5-XML-Twig-3.49, p5-XML-Writer-0.625_1, p5-XML-XPath-1.36, p5-XML-XPathEngine-0.14_1, p5-YAML-1.14, p5-YAML-LibYAML-0.59_1, p5-bioperl-1.6.924_4, p5-common-sense-3.74, p5-libwww-6.15, p5-libxml-0.08_1, pango-1.38.0, pciids-20160430, pcre-8.38_1, perl5-5.20.3_13, pixman-0.34.0, png-1.6.21, printproto-1.0.5, python27-2.7.11_2, renderproto-0.11.1, tiff-4.0.6_1, videoproto-2.3.2, xcb-util-0.4.0_1,1, xcb-util-renderutil-0.3.9_1, xextproto-7.3.0, xf86vidmodeproto-2.3.1, xorg-fonts-truetype-7.7_1, xproto-7.0.28
ここにも含まれています: Perl5

p5-transdecoder-2.1.0
Identify candidate coding regions within transcript sequences
詳しい説明 | ソース | Main Web Site
保守担当者: bacon4000@gmail.com
必要なもの: binutils-2.25.1_2,1, cd-hit-4.6.4, gcc-4.8.5_2, gcc-ecj-4.5, gettext-runtime-0.19.7, gmp-5.1.3_3, indexinfo-0.2.4, mpc-1.0.3, mpfr-3.1.4, p5-URI-1.71, perl5-5.20.3_13
ここにも含まれています: Perl5

paml-4.9a
最尤法による系統学的解析 (PAML)
詳しい説明 | ソース | Main Web Site
保守担当者: jrm@ftfl.ca
必要なもの: gettext-runtime-0.19.7, gmake-4.1_2, indexinfo-0.2.4

phrap-1.090518
Phrap is a program for assembling shotgun DNA sequence data
詳しい説明 | ソース | Main Web Site
保守担当者: mzaki@m.u-tokyo.ac.jp

phred-0.020425.c
Base calling and quality value assignment on DNA sequencing
詳しい説明 | ソース | Main Web Site
保守担当者: mzaki@m.u-tokyo.ac.jp

phylip-3.696
系統推論パッケージ
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org
必要なもの: bash-4.3.42_1, gettext-runtime-0.19.7, gmake-4.1_2, indexinfo-0.2.4, kbproto-1.0.7, libICE-1.0.9_1,1, libSM-1.2.2_3,1, libX11-1.6.3,1, libXau-1.0.8_3, libXaw-1.0.13,2, libXdmcp-1.1.2, libXext-1.3.3_1,1, libXmu-1.1.2_3,1, libXp-1.0.3,1, libXpm-3.5.11_4, libXt-1.1.5,1, libpthread-stubs-0.3_6, libxcb-1.11.1, libxml2-2.9.3, printproto-1.0.5, xextproto-7.3.0, xproto-7.0.28

phyml-3.2.0
Simple, fast, and accurate algorithm to estimate large phylogenies
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org
必要なもの: autoconf-2.69, autoconf-wrapper-20131203, automake-1.15_1, automake-wrapper-20131203, indexinfo-0.2.4, libtool-2.4.6, m4-1.4.17_1,1, perl5-5.20.3_13, pkgconf-0.9.12_1

platon-2015.03.30
PLATON は結晶学のツールの一つです
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org
必要なもの: binutils-2.25.1_2,1, gcc-4.8.5_2, gcc-ecj-4.5, gettext-runtime-0.19.7, gmp-5.1.3_3, indexinfo-0.2.4, kbproto-1.0.7, libX11-1.6.3,1, libXau-1.0.8_3, libXdmcp-1.1.2, libpthread-stubs-0.3_6, libxcb-1.11.1, libxml2-2.9.3, mpc-1.0.3, mpfr-3.1.4, xproto-7.0.28

plink-1.07_4
Whole genome association analysis toolset
詳しい説明 | ソース | Main Web Site
保守担当者: bacon4000@gmail.com
必要なもの: binutils-2.25.1_2,1, blas-3.5.0_3, gcc-4.8.5_2, gcc-ecj-4.5, gettext-runtime-0.19.7, gmake-4.1_2, gmp-5.1.3_3, indexinfo-0.2.4, lapack-3.5.0, mpc-1.0.3, mpfr-3.1.4
ここにも含まれています: Science

plinkseq-0.10
Toolset for working with human genetic variation data
詳しい説明 | ソース | Main Web Site
保守担当者: bacon4000@gmail.com
必要なもの: gettext-runtime-0.19.7, gmake-4.1_2, indexinfo-0.2.4
ここにも含まれています: Science

primer3-2.3.6
Primer3 helps to choose primers for PCR reactions
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org
必要なもの: gettext-runtime-0.19.7, gmake-4.1_2, indexinfo-0.2.4

protomol-2.0.3_12
OO, component based, framework for molecular dynamics (MD) simulations
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org
必要なもの: damageproto-1.2.1, dri2proto-2.8, expat-2.1.1, fixesproto-5.0, freeglut-3.0.0, inputproto-2.3.1, jbigkit-2.1_1, jpeg-turbo-1.4.2, kbproto-1.0.7, libGL-11.1.2, libGLU-9.0.0_2, libICE-1.0.9_1,1, libSM-1.2.2_3,1, libX11-1.6.3,1, libXau-1.0.8_3, libXdamage-1.1.4_3, libXdmcp-1.1.2, libXext-1.3.3_1,1, libXfixes-5.0.1_3, libXi-1.7.6,1, libXmu-1.1.2_3,1, libXrandr-1.5.0, libXrender-0.9.9, libXt-1.1.5,1, libXv-1.0.10_3,1, libXvMC-1.0.9, libXxf86vm-1.1.4_1, libdevq-0.0.2_1, libdrm-2.4.66,1, libglapi-11.1.2, libpciaccess-0.13.4, libpthread-stubs-0.3_6, libxcb-1.11.1, libxml2-2.9.3, libxshmfence-1.2, pciids-20160430, png-1.6.21, randrproto-1.5.0, renderproto-0.11.1, tiff-4.0.6_1, videoproto-2.3.2, xextproto-7.3.0, xf86vidmodeproto-2.3.1, xproto-7.0.28

psi88-1.0_8
波動関数(分子軌道)を三次元にプロットする
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org
必要なもの: binutils-2.25.1_2,1, gcc-4.8.5_2, gcc-ecj-4.5, gettext-runtime-0.19.7, gmp-5.1.3_3, indexinfo-0.2.4, mpc-1.0.3, mpfr-3.1.4

py27-biom-format-2.1.5
Biological Observation Matrix (BIOM) Format Project
詳しい説明 | ソース | Main Web Site
保守担当者: jrm@ftfl.ca
必要なもの: binutils-2.25.1_2,1, blas-3.5.0_3, cblas-1.0_4, gcc-4.8.5_2, gcc-ecj-4.5, gettext-runtime-0.19.7, gmp-5.1.3_3, hdf-szip-2.1_2, hdf5-1.10.0, indexinfo-0.2.4, lapack-3.5.0, libffi-3.2.1, mpc-1.0.3, mpfr-3.1.4, openblas-0.2.18,1, py27-h5py-2.5.0_1, py27-numpy-1.11.0,1, py27-setuptools27-20.0, py27-six-1.10.0, python27-2.7.11_2, suitesparse-4.0.2_4
ここにも含まれています: Python

py27-biopython-1.66
生物情報学用の python モジュールコレクション
詳しい説明 | ソース | Main Web Site
保守担当者: mauricio@arareko.net
必要なもの: binutils-2.25.1_2,1, blas-3.5.0_3, cblas-1.0_4, gcc-4.8.5_2, gcc-ecj-4.5, gettext-runtime-0.19.7, gmp-5.1.3_3, indexinfo-0.2.4, lapack-3.5.0, libffi-3.2.1, mpc-1.0.3, mpfr-3.1.4, openblas-0.2.18,1, py27-numpy-1.11.0,1, py27-reportlab1-1.21.2_3, py27-setuptools27-20.0, python2-2_3, python27-2.7.11_2, suitesparse-4.0.2_4
ここにも含まれています: Python

pycogent-1.5.3_3
Toolkit for statistical analysis of biological sequences
詳しい説明 | ソース | Main Web Site
保守担当者: wen@FreeBSD.org
必要なもの: binutils-2.25.1_2,1, blas-3.5.0_3, cblas-1.0_4, cython-0.24, gcc-4.8.5_2, gcc-ecj-4.5, gettext-runtime-0.19.7, gmp-5.1.3_3, indexinfo-0.2.4, lapack-3.5.0, libedit-3.1.20150325_2, libffi-3.2.1, mpc-1.0.3, mpfr-3.1.4, mysql56-client-5.6.30, openblas-0.2.18,1, perl5-5.20.3_13, postgresql93-client-9.3.13, py27-Babel-2.3.4, py27-Jinja2-2.8, py27-MarkupSafe-0.23, py27-MySQLdb-1.2.5, py27-alabaster-0.7.6, py27-docutils-0.12, py27-imagesize-0.7.1, py27-numpy-1.11.0,1, py27-psycopg2-2.6.1_1, py27-pygments-2.1.3, py27-pystemmer-1.3.0_1, py27-pytz-2016.4,1, py27-setuptools27-20.0, py27-six-1.10.0, py27-snowballstemmer-1.2.0_1, py27-sphinx-1.4.1, py27-sphinx_rtd_theme-0.1.9, py27-sqlalchemy06-0.6.9_1, py27-sqlite3-2.7.11_7, python2-2_3, python27-2.7.11_2, sqlite3-3.12.2, suitesparse-4.0.2_4
ここにも含まれています: Python

pyfasta-0.5.2_1
Fast, memory-efficient, pythonic access to fasta sequence files
詳しい説明 | ソース | Main Web Site
保守担当者: wen@FreeBSD.org
必要なもの: binutils-2.25.1_2,1, blas-3.5.0_3, cblas-1.0_4, gcc-4.8.5_2, gcc-ecj-4.5, gettext-runtime-0.19.7, gmp-5.1.3_3, indexinfo-0.2.4, lapack-3.5.0, libffi-3.2.1, mpc-1.0.3, mpfr-3.1.4, openblas-0.2.18,1, py27-numpy-1.11.0,1, py27-setuptools27-20.0, python27-2.7.11_2, suitesparse-4.0.2_4
ここにも含まれています: Python

python-nexus-1.34
Generic nexus file format reader for python
詳しい説明 | ソース | Main Web Site
保守担当者: wen@FreeBSD.org
必要なもの: gettext-runtime-0.19.7, indexinfo-0.2.4, libffi-3.2.1, py27-setuptools27-20.0, python27-2.7.11_2
ここにも含まれています: Python

raster3d-3.0.2_6
Set of tools for generating raster images of proteins and molecules
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org
必要なもの: ImageMagick-6.9.4.3,1, avahi-app-0.6.31_5, binutils-2.25.1_2,1, ca_root_nss-3.22.2, cairo-1.14.6,2, cups-2.1.3_2, damageproto-1.2.1, dbus-1.8.20, dbus-glib-0.104, dejavu-2.35, dri2proto-2.8, encodings-1.0.4_3,1, expat-2.1.1, fftw3-3.3.3_2, fixesproto-5.0, font-bh-ttf-1.0.3_3, font-misc-ethiopic-1.0.3_3, font-misc-meltho-1.0.3_3, font-util-1.3.1, fontconfig-2.11.1_2,1, freetype2-2.6.3, gbm-11.1.2, gcc-4.8.5_2, gcc-ecj-4.5, gdbm-1.12, gdk-pixbuf2-2.32.3, gettext-runtime-0.19.7, ghostscript9-agpl-base-9.16_5, ghostscript9-agpl-x11-9.16_2, giflib-5.1.3, glib-2.46.2, glproto-1.4.17, gmp-5.1.3_3, gnome_subr-1.0, gnutls-3.4.11, gobject-introspection-1.46.0, graphite2-1.3.8, gsfonts-8.11_6, harfbuzz-1.2.3, icu-55.1, indexinfo-0.2.4, inputproto-2.3.1, jasper-1.900.1_16, jbig2dec-0.13, jbigkit-2.1_1, jpeg-turbo-1.4.2, kbproto-1.0.7, lcms2-2.7_2, libEGL-11.1.2, libGL-11.1.2, libICE-1.0.9_1,1, libSM-1.2.2_3,1, libX11-1.6.3,1, libXau-1.0.8_3, libXdamage-1.1.4_3, libXdmcp-1.1.2, libXext-1.3.3_1,1, libXfixes-5.0.1_3, libXft-2.3.2_1, libXi-1.7.6,1, libXrender-0.9.9, libXt-1.1.5,1, libXv-1.0.10_3,1, libXvMC-1.0.9, libXxf86vm-1.1.4_1, libcroco-0.6.11, libdaemon-0.14_1, libdevq-0.0.2_1, libdrm-2.4.66,1, libedit-3.1.20150325_2, libffi-3.2.1, libfontenc-1.1.3, libfpx-1.3.1.4_1, libgd-2.1.0_7,1, libglapi-11.1.2, libgsf-1.14.36, libiconv-1.14_9, libidn-1.31, liblqr-1-0.4.1_8, libltdl-2.4.6, libpaper-1.1.24.4, libpciaccess-0.13.4, libpthread-stubs-0.3_6, librsvg2-2.40.13, libtasn1-4.8, libwmf-0.2.8.4_15, libxcb-1.11.1, libxml2-2.9.3, libxshmfence-1.2, llvm37-3.7.1_2, mkfontdir-1.0.7, mkfontscale-1.1.2, mpc-1.0.3, mpfr-3.1.4, nettle-3.2, openjpeg-2.1.1, p11-kit-0.23.2, pango-1.38.0, pciids-20160430, pcre-8.38_1, perl5-5.20.3_13, pixman-0.34.0, pkgconf-0.9.12_1, png-1.6.21, python2-2_3, python27-2.7.11_2, renderproto-0.11.1, svgalib-1.4.3_7, tiff-4.0.6_1, tpm-emulator-0.7.4_1, trousers-0.3.13, videoproto-2.3.2, webp-0.5.0, xcb-util-0.4.0_1,1, xcb-util-renderutil-0.3.9_1, xextproto-7.3.0, xf86vidmodeproto-2.3.1, xorg-fonts-truetype-7.7_1, xproto-7.0.28
ここにも含まれています: Graphics

recombine-1.41
Program to fit population models across sites
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org

ruby22-bio-1.5.0
Integrated environment for Bioinformatics written in Ruby
詳しい説明 | ソース | Main Web Site
保守担当者: mauricio@arareko.net
必要なもの: indexinfo-0.2.4, libedit-3.1.20150325_2, libffi-3.2.1, libyaml-0.1.6_2, ruby-2.2.5,1
ここにも含まれています: Ruby

samtools-1.3
Tools for manipulating next-generation sequencing data
詳しい説明 | ソース | Main Web Site
保守担当者: cartwright@asu.edu
必要なもの: autoconf-2.69, autoconf-wrapper-20131203, automake-1.15_1, automake-wrapper-20131203, ca_root_nss-3.22.2, curl-7.48.0_2, gettext-runtime-0.19.7, gmake-4.1_2, htslib-1.3, indexinfo-0.2.4, m4-1.4.17_1,1, perl5-5.20.3_13

seaview-4.5.4.8
多重 DNA 配列の整列編集
詳しい説明 | ソース | Main Web Site
保守担当者: bofh@FreeBSD.org
必要なもの: damageproto-1.2.1, dri2proto-2.8, expat-2.1.1, fixesproto-5.0, fltk-1.3.3_2, fontconfig-2.11.1_2,1, freetype2-2.6.3, gettext-runtime-0.19.7, gmake-4.1_2, indexinfo-0.2.4, jpeg-turbo-1.4.2, kbproto-1.0.7, libGL-11.1.2, libGLU-9.0.0_2, libX11-1.6.3,1, libXau-1.0.8_3, libXdamage-1.1.4_3, libXdmcp-1.1.2, libXext-1.3.3_1,1, libXfixes-5.0.1_3, libXft-2.3.2_1, libXinerama-1.1.3_3,1, libXrender-0.9.9, libXv-1.0.10_3,1, libXvMC-1.0.9, libXxf86vm-1.1.4_1, libdevq-0.0.2_1, libdrm-2.4.66,1, libglapi-11.1.2, libpciaccess-0.13.4, libpthread-stubs-0.3_6, libxcb-1.11.1, libxml2-2.9.3, libxshmfence-1.2, pciids-20160430, png-1.6.21, renderproto-0.11.1, videoproto-2.3.2, xextproto-7.3.0, xf86vidmodeproto-2.3.1, xineramaproto-1.2.1, xproto-7.0.28

seqan-2.1.1
C++ Sequence Analysis Template Library
詳しい説明 | ソース | Main Web Site
保守担当者: h2+fbsdports@fsfe.org

seqan-apps-2.1.1
Official Bioinformatic applications based on the SeqAn library
詳しい説明 | ソース | Main Web Site
保守担当者: h2+fbsdports@fsfe.org
必要なもの: binutils-2.25.1_2,1, boost-libs-1.55.0_10, ca_root_nss-3.22.2, cmake-3.5.2_1, cmake-modules-3.5.2, curl-7.48.0_2, expat-2.1.1, gcc-ecj-4.5, gcc49-4.9.4.s20160427, gettext-runtime-0.19.7, gmp-5.1.3_3, icu-55.1, indexinfo-0.2.4, jsoncpp-1.7.2, libarchive-3.2.0_1,1, liblz4-131, lzo2-2.09, mpc-1.0.3, mpfr-3.1.4

seqan1-1.3.1_3
C++ Sequence Analysis Library
詳しい説明 | ソース | Main Web Site
保守担当者: h2+fbsdports@fsfe.org

seqio-1.2.2_1
Set of C functions which can read/write biological sequence files
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org

seqtools-4.42.1
Tools for visualising sequence alignments
詳しい説明 | ソース | Main Web Site
保守担当者: pi@FreeBSD.org
必要なもの: atk-2.18.0, avahi-app-0.6.31_5, ca_root_nss-3.22.2, cairo-1.14.6,2, clang36-3.6.2, compositeproto-0.4.2, cups-2.1.3_2, curl-7.48.0_2, damageproto-1.2.1, dbus-1.8.20, dbus-glib-0.104, dejavu-2.35, dri2proto-2.8, encodings-1.0.4_3,1, expat-2.1.1, fixesproto-5.0, font-bh-ttf-1.0.3_3, font-misc-ethiopic-1.0.3_3, font-misc-meltho-1.0.3_3, font-util-1.3.1, fontconfig-2.11.1_2,1, freetype2-2.6.3, gbm-11.1.2, gdbm-1.12, gdk-pixbuf2-2.32.3, gettext-runtime-0.19.7, glib-2.46.2, glproto-1.4.17, gmp-5.1.3_3, gnome_subr-1.0, gnutls-3.4.11, gobject-introspection-1.46.0, graphite2-1.3.8, gtk-update-icon-cache-2.24.29, gtk2-2.24.29_2, harfbuzz-1.2.3, hicolor-icon-theme-0.15, icu-55.1, indexinfo-0.2.4, inputproto-2.3.1, jasper-1.900.1_16, jbigkit-2.1_1, jpeg-turbo-1.4.2, kbproto-1.0.7, libEGL-11.1.2, libGL-11.1.2, libICE-1.0.9_1,1, libSM-1.2.2_3,1, libX11-1.6.3,1, libXau-1.0.8_3, libXcomposite-0.4.4_3,1, libXcursor-1.1.14_3, libXdamage-1.1.4_3, libXdmcp-1.1.2, libXext-1.3.3_1,1, libXfixes-5.0.1_3, libXft-2.3.2_1, libXi-1.7.6,1, libXinerama-1.1.3_3,1, libXrandr-1.5.0, libXrender-0.9.9, libXt-1.1.5,1, libXv-1.0.10_3,1, libXvMC-1.0.9, libXxf86vm-1.1.4_1, libdaemon-0.14_1, libdevq-0.0.2_1, libdrm-2.4.66,1, libedit-3.1.20150325_2, libffi-3.2.1, libfontenc-1.1.3, libglapi-11.1.2, libiconv-1.14_9, libidn-1.31, libpaper-1.1.24.4, libpciaccess-0.13.4, libpthread-stubs-0.3_6, libtasn1-4.8, libxcb-1.11.1, libxml2-2.9.3, libxshmfence-1.2, llvm36-3.6.2_2, llvm37-3.7.1_2, mkfontdir-1.0.7, mkfontscale-1.1.2, nettle-3.2, p11-kit-0.23.2, pango-1.38.0, pciids-20160430, pcre-8.38_1, perl5-5.20.3_13, pixman-0.34.0, pkgconf-0.9.12_1, png-1.6.21, python-2.7_2,2, python2-2_3, python27-2.7.11_2, randrproto-1.5.0, renderproto-0.11.1, shared-mime-info-1.5, sqlite3-3.12.2, tiff-4.0.6_1, tpm-emulator-0.7.4_1, trousers-0.3.13, videoproto-2.3.2, xcb-util-0.4.0_1,1, xcb-util-renderutil-0.3.9_1, xextproto-7.3.0, xf86vidmodeproto-2.3.1, xineramaproto-1.2.1, xorg-fonts-truetype-7.7_1, xproto-7.0.28

sim4-2003.09.21_1
抽出した DNA をゲノム配列で整列するアルゴリズム
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org

slclust-2010.02.02
Single-linkage clustering with Jaccard similarity
詳しい説明 | ソース | Main Web Site
保守担当者: bacon4000@gmail.com

ssaha-3.1c_2
Very fast matching and alignment of DNA sequences
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org
必要なもの: binutils-2.25.1_2,1, gcc-4.8.5_2, gcc-ecj-4.5, gettext-runtime-0.19.7, gmake-4.1_2, gmp-5.1.3_3, indexinfo-0.2.4, mpc-1.0.3, mpfr-3.1.4

tRNAscan-SE-1.23_1
Improved tool for transfer RNA detection
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org
必要なもの: perl5-5.20.3_13

t_coffee-9.03_3
Multiple DNA or protein sequence alignment package
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org
必要なもの: binutils-2.25.1_2,1, clustalw-2.1_1, gcc-4.8.5_2, gcc-ecj-4.5, gettext-runtime-0.19.7, gmp-5.1.3_3, indexinfo-0.2.4, mpc-1.0.3, mpfr-3.1.4

tinker-7.1.3
汎用分子モデリングパッケージ
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org
必要なもの: binutils-2.25.1_2,1, gcc-4.8.5_2, gcc-ecj-4.5, gettext-runtime-0.19.7, gmp-5.1.3_3, indexinfo-0.2.4, mpc-1.0.3, mpfr-3.1.4

treepuzzle-5.2
Maximum likelihood phylogeny reconstruction using quartets
詳しい説明 | ソース | Main Web Site
保守担当者: jan.lentfer@web.de

treeviewx-0.5.1s20100823_2
Phylogenetic tree viewer
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org
必要なもの: ORBit2-2.14.19_1, atk-2.18.0, avahi-app-0.6.31_5, ca_root_nss-3.22.2, cairo-1.14.6,2, compositeproto-0.4.2, cups-2.1.3_2, damageproto-1.2.1, dbus-1.8.20, dbus-glib-0.104, dconf-0.24.0_1, dejavu-2.35, dri2proto-2.8, encodings-1.0.4_3,1, expat-2.1.1, fixesproto-5.0, font-bh-ttf-1.0.3_3, font-misc-ethiopic-1.0.3_3, font-misc-meltho-1.0.3_3, font-util-1.3.1, fontconfig-2.11.1_2,1, freetype2-2.6.3, gbm-11.1.2, gconf2-3.2.6_4, gdbm-1.12, gdk-pixbuf2-2.32.3, gettext-runtime-0.19.7, glib-2.46.2, glproto-1.4.17, gmake-4.1_2, gmp-5.1.3_3, gnome_subr-1.0, gnutls-3.4.11, gobject-introspection-1.46.0, graphite2-1.3.8, gstreamer-0.10.36_4, gstreamer-plugins-0.10.36_6,3, gtk-update-icon-cache-2.24.29, gtk2-2.24.29_2, harfbuzz-1.2.3, hicolor-icon-theme-0.15, icu-55.1, indexinfo-0.2.4, inputproto-2.3.1, jasper-1.900.1_16, jbigkit-2.1_1, jpeg-turbo-1.4.2, kbproto-1.0.7, libEGL-11.1.2, libGL-11.1.2, libGLU-9.0.0_2, libICE-1.0.9_1,1, libIDL-0.8.14_2, libSM-1.2.2_3,1, libX11-1.6.3,1, libXau-1.0.8_3, libXcomposite-0.4.4_3,1, libXcursor-1.1.14_3, libXdamage-1.1.4_3, libXdmcp-1.1.2, libXext-1.3.3_1,1, libXfixes-5.0.1_3, libXft-2.3.2_1, libXi-1.7.6,1, libXinerama-1.1.3_3,1, libXrandr-1.5.0, libXrender-0.9.9, libXt-1.1.5,1, libXv-1.0.10_3,1, libXvMC-1.0.9, libXxf86vm-1.1.4_1, libdaemon-0.14_1, libdevq-0.0.2_1, libdrm-2.4.66,1, libedit-3.1.20150325_2, libffi-3.2.1, libfontenc-1.1.3, libglapi-11.1.2, libiconv-1.14_9, libidn-1.31, libmspack-0.5, libpaper-1.1.24.4, libpciaccess-0.13.4, libpthread-stubs-0.3_6, libtasn1-4.8, libxcb-1.11.1, libxml2-2.9.3, libxshmfence-1.2, llvm37-3.7.1_2, mkfontdir-1.0.7, mkfontscale-1.1.2, nettle-3.2, nspr-4.12, orc-0.4.25, p11-kit-0.23.2, pango-1.38.0, pangox-compat-0.0.2_1, pciids-20160430, pcre-8.38_1, perl5-5.20.3_13, pixman-0.34.0, png-1.6.21, polkit-0.113_1, python-2.7_2,2, python2-2_3, python27-2.7.11_2, randrproto-1.5.0, renderproto-0.11.1, shared-mime-info-1.5, spidermonkey170-17.0.0_1, tiff-4.0.6_1, tpm-emulator-0.7.4_1, trousers-0.3.13, videoproto-2.3.2, wx28-gtk2-2.8.12_6, wx28-gtk2-common-2.8.12_6, wx28-gtk2-contrib-2.8.12_6, wx28-gtk2-contrib-common-2.8.12_6, xcb-util-0.4.0_1,1, xcb-util-renderutil-0.3.9_1, xextproto-7.3.0, xf86vidmodeproto-2.3.1, xineramaproto-1.2.1, xorg-fonts-truetype-7.7_1, xproto-7.0.28

trimmomatic-0.35
Flexible read trimming tool for Illumina NGS data
詳しい説明 | ソース | Main Web Site
保守担当者: bacon4000@gmail.com
必要なもの: alsa-lib-1.1.1_1, dejavu-2.35, expat-2.1.1, fixesproto-5.0, fontconfig-2.11.1_2,1, freetype2-2.6.3, giflib-5.1.3, inputproto-2.3.1, java-zoneinfo-2016.d, javavmwrapper-2.5, kbproto-1.0.7, libICE-1.0.9_1,1, libSM-1.2.2_3,1, libX11-1.6.3,1, libXau-1.0.8_3, libXdmcp-1.1.2, libXext-1.3.3_1,1, libXfixes-5.0.1_3, libXi-1.7.6,1, libXrender-0.9.9, libXt-1.1.5,1, libXtst-1.2.2_3, libfontenc-1.1.3, libpthread-stubs-0.3_6, libxcb-1.11.1, libxml2-2.9.3, mkfontdir-1.0.7, mkfontscale-1.1.2, openjdk8-8.92.14, recordproto-1.14.2, renderproto-0.11.1, xextproto-7.3.0, xproto-7.0.28
ここにも含まれています: Java

ugene-1.22.0_1
Free, open-source, cross-platform bioinformatics toolkit
詳しい説明 | ソース | Main Web Site
保守担当者: h2+fbsdports@fsfe.org
必要なもの: avahi-app-0.6.31_5, bash-4.3.42_1, ca_root_nss-3.22.2, cairo-1.14.6,2, compositeproto-0.4.2, cups-2.1.3_2, damageproto-1.2.1, dbus-1.8.20, dbus-glib-0.104, desktop-file-utils-0.22_3, dri2proto-2.8, expat-2.1.1, fixesproto-5.0, fontcacheproto-0.1.3, fontconfig-2.11.1_2,1, freetype2-2.6.3, gbm-11.1.2, gdbm-1.12, gettext-runtime-0.19.7, giflib-5.1.3, glib-2.46.2, glproto-1.4.17, gmp-5.1.3_3, gnome_subr-1.0, gnutls-3.4.11, gobject-introspection-1.46.0, graphite2-1.3.8, gstreamer1-1.8.0, gstreamer1-plugins-1.8.0, harfbuzz-1.2.3, hicolor-icon-theme-0.15, icu-55.1, indexinfo-0.2.4, inputproto-2.3.1, iso-codes-3.65, jasper-1.900.1_16, jbigkit-2.1_1, jpeg-turbo-1.4.2, kbproto-1.0.7, lcms-1.19_6,1, libEGL-11.1.2, libGL-11.1.2, libGLU-9.0.0_2, libICE-1.0.9_1,1, libSM-1.2.2_3,1, libX11-1.6.3,1, libXau-1.0.8_3, libXcomposite-0.4.4_3,1, libXdamage-1.1.4_3, libXdmcp-1.1.2, libXext-1.3.3_1,1, libXfixes-5.0.1_3, libXfontcache-1.0.5_3, libXi-1.7.6,1, libXmu-1.1.2_3,1, libXrender-0.9.9, libXt-1.1.5,1, libXv-1.0.10_3,1, libXvMC-1.0.9, libXxf86vm-1.1.4_1, libdaemon-0.14_1, libdevq-0.0.2_1, libdrm-2.4.66,1, libedit-3.1.20150325_2, libffi-3.2.1, libgcrypt-1.7.0, libglapi-11.1.2, libgpg-error-1.22, libiconv-1.14_9, libidn-1.31, libmng-1.0.10_2, libpaper-1.1.24.4, libpciaccess-0.13.4, libproxy-0.4.12, libpthread-stubs-0.3_6, libtasn1-4.8, libxcb-1.11.1, libxkbcommon-0.5.0_1, libxml2-2.9.3, libxshmfence-1.2, libxslt-1.1.28_8, llvm37-3.7.1_2, nettle-3.2, orc-0.4.25, p11-kit-0.23.2, pciids-20160430, pcre-8.38_1, perl5-5.20.3_13, pixman-0.34.0, png-1.6.21, python2-2_3, python27-2.7.11_2, qt5-buildtools-5.5.1, qt5-core-5.5.1, qt5-dbus-5.5.1, qt5-gui-5.5.1, qt5-imageformats-5.5.1_1, qt5-linguisttools-5.5.1, qt5-network-5.5.1, qt5-opengl-5.5.1, qt5-printsupport-5.5.1_1, qt5-qmake-5.5.1, qt5-qml-5.5.1, qt5-quick-5.5.1, qt5-script-5.5.1, qt5-scripttools-5.5.1, qt5-sql-5.5.1, qt5-svg-5.5.1, qt5-testlib-5.5.1, qt5-webkit-5.5.1_1, qt5-widgets-5.5.1, qt5-xml-5.5.1, qt5-xmlpatterns-5.5.1, renderproto-0.11.1, sqlite3-3.12.2, tiff-4.0.6_1, tpm-emulator-0.7.4_1, trousers-0.3.13, videoproto-2.3.2, webp-0.5.0, xcb-util-0.4.0_1,1, xcb-util-image-0.4.0_1, xcb-util-keysyms-0.4.0_1, xcb-util-renderutil-0.3.9_1, xcb-util-wm-0.4.1_3, xdg-utils-1.1.1, xextproto-7.3.0, xf86vidmodeproto-2.3.1, xprop-1.2.2, xproto-7.0.28, xset-1.2.3_1
ここにも含まれています: Science

vcftools-0.1.14
Tools for working with VCF genomics files
詳しい説明 | ソース | Main Web Site
保守担当者: bacon4000@gmail.com
必要なもの: autoconf-2.69, autoconf-wrapper-20131203, automake-1.15_1, automake-wrapper-20131203, gettext-runtime-0.19.7, gmake-4.1_2, indexinfo-0.2.4, m4-1.4.17_1,1, perl5-5.20.3_13, pkgconf-0.9.12_1

velvet-1.2.10_2
Sequence assembler for very short reads
詳しい説明 | ソース | Main Web Site
保守担当者: mzaki@m.u-tokyo.ac.jp
必要なもの: gettext-runtime-0.19.7, gmake-4.1_2, indexinfo-0.2.4, libffi-3.2.1, perl5-5.20.3_13, python27-2.7.11_2

wise-2.4.1
Intelligent algorithms for DNA searches
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org
必要なもの: gettext-runtime-0.19.7, glib-2.46.2, indexinfo-0.2.4, libffi-3.2.1, libiconv-1.14_9, pcre-8.38_1, perl5-5.20.3_13, pkgconf-0.9.12_1, python27-2.7.11_2

xmolwt-0.7_6
与えられた分子式から分子量や各元素のパーセントを計算する
詳しい説明 | ソース | Main Web Site
保守担当者: ports@FreeBSD.org
必要なもの: fixesproto-5.0, gettext-runtime-0.19.7, glib12-1.2.10_15, gmake-4.1_2, gtk12-1.2.10_24, indexinfo-0.2.4, inputproto-2.3.1, kbproto-1.0.7, libICE-1.0.9_1,1, libSM-1.2.2_3,1, libX11-1.6.3,1, libXau-1.0.8_3, libXdmcp-1.1.2, libXext-1.3.3_1,1, libXfixes-5.0.1_3, libXi-1.7.6,1, libpthread-stubs-0.3_6, libxcb-1.11.1, libxml2-2.9.3, xextproto-7.3.0, xproto-7.0.28

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